Development and Initial Testing of EcoToxChip, a Novel Toxicogenomics Tool for Environmental Management and Chemical Risk Assessment

RNA-Seq is not required to determine stable reference genes for qPCR normalization

(2022) Nirmal Kumar Sampathkumar et al.   PLoS Computational Biology

Consideration of metabolomics and transcriptomics data in the context of using avian embryos for toxicity testing

(2022) Elena Legrand et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

A framework for establishing scientific confidence in new approach methodologies

(2022) Anna J. van der Zalm et al.   ARCHIVES OF TOXICOLOGY

ToxChip PCR Arrays for Two Arctic-Breeding Seabirds: Applications for Regional Environmental Assessments

(2021) Yasmeen Zahaby et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Development of a Comprehensive Toxicity Pathway Model for 17α-Ethinylestradiol in Early Life Stage Fathead Minnows (Pimephales promelas)

(2021) Alper James G. Alcaraz et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Cross-Model Comparison of Transcriptomic Dose–Response of Short-Chain Chlorinated Paraffins

(2021) Pu Xia et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Using Transcriptomics and Metabolomics to Understand Species Differences in Sensitivity to Chlorpyrifos in Japanese Quail and Double‐Crested Cormorant Embryos

(2021) Jean‐Pierre Desforges et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

EcoToxXplorer: Leveraging Design Thinking to Develop a Standardized Web‐Based Transcriptomics Analytics Platform for Diverse Users

(2021) Othman Soufan et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome

(2021) John W. Martinson et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

EcoToxModules: Custom gene sets to organize and analyze toxicogenomics data from ecological species

(2020) Jessica Ewald et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Toxicogenomic Assessment of Complex Chemical Signatures in Double-Crested Cormorant Embryos from Variably Contaminated Great Lakes Sites

(2020) Pu Xia et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

EcoToxChip: A next-generation toxicogenomics tool for chemical prioritization and environmental management

(2019) Niladri Basu et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

An Early‐life Stage Alternative Testing Strategy for Assessing the Impacts of Environmental Chemicals in Birds

(2019) Amani Farhat et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Transcriptomic points-of-departure from short-term exposure studies are protective of chronic effects for fish exposed to estrogenic chemicals

(2019) Florence Pagé-Larivière et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

T1000: a reduced gene set prioritized for toxicogenomic studies

(2019) Othman Soufan et al.   PeerJ

A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics

(2018) Deepak Mav et al.   PLoS One

PRIORITIZATION OF 10 ORGANIC FLAME RETARDANTS USING AN AVIAN HEPATOCYTE TOXICOGENOMIC ASSAY

(2018) Florence Pagé-Larivière et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data

(2017) Celine Everaert et al.   Scientific Reports

Use of a Novel Double-Crested Cormorant ToxChip PCR Array and the EROD Assay to Determine Effects of Environmental Contaminants in Primary Hepatocytes

(2016) Doug Crump et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biochemical and Transcriptomic Effects of Herring Gull Egg Extracts from Variably Contaminated Colonies of the Laurentian Great Lakes in Chicken Hepatocytes

(2015) Doug Crump et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Use of an avian hepatocyte assay and the avian toxchip polymerse chain reaction array for testing prioritization of 16 organic flame retardants

(2013) Emily Porter et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Genomic Biomarkers of Phthalate-Induced Male Reproductive Developmental Toxicity: A Targeted RT-PCR Array Approach for Defining Relative Potency

(2011) Bethany R. Hannas et al.   TOXICOLOGICAL SCIENCES