De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome

EPIC-CoGe: managing and analyzing genomic data

(2018) Andrew D L Nelson et al.   BIOINFORMATICS

mySyntenyPortal: an application package to construct websites for synteny block analysis

(2018) Jongin Lee et al.   BMC BIOINFORMATICS

Enhancing the fathead minnow fish embryo toxicity test: Optimizing embryo production and assessing the utility of additional test endpoints

(2018) Kyle S. Roush et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation

(2018) Casey Hanson et al.   GENOME RESEARCH

piRNN: deep learning algorithm for piRNA prediction

(2018) Kai Wang et al.   PeerJ

De novo assembly of haplotype-resolved genomes with trio binning

(2018) Sergey Koren et al.   NATURE BIOTECHNOLOGY

PIWI-interacting RNAs: small RNAs with big functions

(2018) Deniz M. Ozata et al.   NATURE REVIEWS GENETICS

Toxicogenomics: A 2020 Vision

(2018) Zhichao Liu et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

Tissue-Based Mapping of the Fathead Minnow (Pimephales promelas) Transcriptome and Proteome

(2018) Candice Lavelle et al.   Frontiers in Endocrinology

First-generation annotations for the fathead minnow (Pimephales promelas ) genome

(2017) Travis W. Saari et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

The contribution of transposable elements to size variations between four teleost genomes

(2016) Bo Gao et al.   Mobile DNA

Sequencing and de novo draft assemblies of a fathead minnow (Pimephales promelas) reference genome

(2015) Frank R. Burns et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Prediction of piRNAs using transposon interaction and a support vector machine

(2014) Kai Wang et al.   BMC BIOINFORMATICS

Direct Regulation of Gonadotropin Release by Neurokinin B in Tilapia (Oreochromis niloticus)

(2014) Jakob Biran et al.   ENDOCRINOLOGY

A new approach for the laboratory culture of the fathead minnow,Pimephales promelas

(2013) Denise A. Gordon et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Conservation of lipid metabolic gene transcriptional regulatory networks in fish and mammals

(2013) Greta Carmona-Antoñanzas et al.   GENE

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies

(2011) Liliana Florea et al.   PLoS One

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

(2010) M. G. Grabherr et al.   BIOINFORMATICS

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE