Fish microbiomics: Strengths and limitations of MinION sequencing of gilthead sea bream (Sparus aurata) intestinal microbiota
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Title
Fish microbiomics: Strengths and limitations of MinION sequencing of gilthead sea bream (Sparus aurata) intestinal microbiota
Authors
Keywords
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Journal
AQUACULTURE
Volume 569, Issue -, Pages 739388
Publisher
Elsevier BV
Online
2023-02-21
DOI
10.1016/j.aquaculture.2023.739388
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Note: Only part of the references are listed.- Diet and Host Genetics Drive the Bacterial and Fungal Intestinal Metatranscriptome of Gilthead Sea Bream
- (2022) Fernando Naya-Català et al. Frontiers in Microbiology
- Rice protein concentrate as a fish meal substitute in Oreochromis niloticus: Effects on immune response, intestinal cytokines, Aeromonas veronii resistance, and gut microbiota composition
- (2022) Rasha M. Reda et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptomic profiling of Gh/Igf system reveals a prompted tissue-specific differentiation and novel hypoxia responsive genes in gilthead sea bream
- (2021) F. Naya-Català et al. Scientific Reports
- Reshaping of Gut Microbiota in Gilthead Sea Bream Fed Microbial and Processed Animal Proteins as the Main Dietary Protein Source
- (2021) Paula Solé-Jiménez et al. Frontiers in Marine Science
- New strategies to improve minimap2 alignment accuracy
- (2021) Heng Li BIOINFORMATICS
- Cross-Talk Between Intestinal Microbiota and Host Gene Expression in Gilthead Sea Bream (Sparus aurata) Juveniles: Insights in Fish Feeds for Increased Circularity and Resource Utilization
- (2021) Fernando Naya-Català et al. Frontiers in Physiology
- Factors Driving Bacterial Microbiota of Eggs from Commercial Hatcheries of European Seabass and Gilthead Seabream
- (2021) Babak Najafpour et al. Microorganisms
- yacrd and fpa: upstream tools for long-read genome assembly
- (2020) Pierre Marijon et al. BIOINFORMATICS
- The Firmicutes/Bacteroidetes Ratio: A Relevant Marker of Gut Dysbiosis in Obese Patients?
- (2020) Fabien Magne et al. Nutrients
- Evaluation of PCR conditions for characterizing bacterial communities with full-length 16S rRNA genes using a portable nanopore sequencer
- (2020) So Fujiyoshi et al. Scientific Reports
- Characterization of Fecal Microbiota with Clinical Specimen Using Long-Read and Short-Read Sequencing Platform
- (2020) Po-Li Wei et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Bacterial Diversity and Antibiotic Susceptibility of Sparus aurata from Aquaculture
- (2020) Vanessa Salgueiro et al. Microorganisms
- Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream
- (2020) M. Carla Piazzon et al. Microbiome
- Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes
- (2019) Mitsuhiko P Sato et al. DNA RESEARCH
- Generating amplicon reads for microbial community assessment with next‐generation sequencing
- (2019) M. Gołębiewski et al. JOURNAL OF APPLIED MICROBIOLOGY
- Sex, Age, and Bacteria: How the Intestinal Microbiota Is Modulated in a Protandrous Hermaphrodite Fish
- (2019) M. Carla Piazzon et al. Frontiers in Microbiology
- Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
- (2019) Volkan Sevim et al. Scientific Data
- NanoPack: visualizing and processing long-read sequencing data
- (2018) Wouter De Coster et al. BIOINFORMATICS
- Metagenome complexity and template length are the main causes of bias in PCR-based bacteria community analysis
- (2018) Wentao Peng et al. JOURNAL OF BASIC MICROBIOLOGY
- Assessment of 16S rRNA gene primers for studying bacterial community structure and function of aging flue-cured tobaccos
- (2018) Fan Wang et al. AMB Express
- Characterization of the skin and gill microbiomes of the farmed seabass (Dicentrarchus labrax) and seabream (Sparus aurata)
- (2018) Daniela Rosado et al. AQUACULTURE
- Genomic GC-Content Affects the Accuracy of 16S rRNA Gene Sequencing Based Microbial Profiling due to PCR Bias
- (2017) Martin F. Laursen et al. Frontiers in Microbiology
- A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
- (2016) Rosalinda D’Amore et al. BMC GENOMICS
- 16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform
- (2016) Fiona Fouhy et al. BMC MICROBIOLOGY
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- (2015) Melanie Schirmer et al. NUCLEIC ACIDS RESEARCH
- Impact of Fishmeal Replacement in Diets for Gilthead Sea Bream (Sparus aurata) on the Gastrointestinal Microbiota Determined by Pyrosequencing the 16S rRNA Gene
- (2015) G. Estruch et al. PLoS One
- 16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice
- (2015) Alan W. Walker et al. Microbiome
- Evaluating Bias of Illumina-Based Bacterial 16S rRNA Gene Profiles
- (2014) Katherine Kennedy et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Dietary differences are reflected on the gut prokaryotic community structure of wild and commercially reared sea bream (Sparus aurata)
- (2014) Konstantinos A. Kormas et al. MicrobiologyOpen
- The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
- (2013) Pelin Yilmaz et al. NUCLEIC ACIDS RESEARCH
- Storage conditions of intestinal microbiota matter in metagenomic analysis
- (2012) Silvia Cardona et al. BMC MICROBIOLOGY
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- Experimental and analytical tools for studying the human microbiome
- (2011) Justin Kuczynski et al. NATURE REVIEWS GENETICS
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- Metagenomics: Read Length Matters
- (2008) K. E. Wommack et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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