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A non-phylogenetic alpha diversity approach on prokaryotic community structure in aquatic systems

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Factors influencing the grass carp gut microbiome and its effect on metabolism

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Changes in intestinal morphology and microbiota caused by dietary administration of inulin and Bacillus subtilis in gilthead sea bream (Sparus aurata L.) specimens

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Cloacibacterium haliotis sp. nov., isolated from the gut of an abalone, Haliotis discus hannai

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Diet rapidly and reproducibly alters the human gut microbiome

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Effects of plant-based diets on the distal gut microbiome of rainbow trout (Oncorhynchus mykiss)

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Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets

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Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

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Intestinal microbiota composition in fishes is influenced by host ecology and environment

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A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters

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Cultivation-independent analysis of archaeal and bacterial communities of the formation water in an Indian coal bed to enhance biotransformation of coal into methane

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Nutrition in organic aquaculture: an inquiry and a discourse

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A Guide to the Natural History of Freshwater Lake Bacteria

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Ecology drives a global network of gene exchange connecting the human microbiome

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Characterization of rainbow trout (Oncorhynchus mykiss) intestinal microbiota and inflammatory marker gene expression in a recirculating aquaculture system

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Dominant and diet-responsive groups of bacteria within the human colonic microbiota

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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

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Lactic acid bacteria vs. pathogens in the gastrointestinal tract of fish: a review

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Global phylogenetic community structure and β-diversity patterns in surface bacterioplankton metacommunities

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

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Diaphorobacter oryzae sp. nov., isolated from a thiosulfate-oxidizing enrichment culture

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Dietary mannan oligosaccharide supplementation modulates intestinal microbial ecology and improves gut morphology of rainbow trout, Oncorhynchus mykiss (Walbaum)

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Two novel pyrene-degrading Diaphorobacter sp. and Pseudoxanthomonas sp. isolated from soil

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Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

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A review on the interactions between gut microbiota and innate immunity of fish: Table 1

(2008) Geovanny D. Gómez et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Shotgun metaproteomics of the human distal gut microbiota

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Symbiotic gut microbes modulate human metabolic phenotypes

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