Performance comparison of sequential and parallel compression applications for DNA raw data

A FASTQ compressor based on integer-mapped k-mer indexing for biologist

(2016) Yeting Zhang et al.   GENE

Advances in high throughput DNA sequence data compression

(2016) Muhammad Sardaraz et al.   Journal of Bioinformatics and Computational Biology

LFQC: a lossless compression algorithm for FASTQ files

(2015) Marius Nicolae et al.   BIOINFORMATICS

FQC: A novel approach for efficient compression, archival, and dissemination of fastq datasets

(2015) Anirban Dutta et al.   Journal of Bioinformatics and Computational Biology

BEETL-fastq: a searchable compressed archive for DNA reads

(2014) L. Janin et al.   BIOINFORMATICS

DSRC 2—Industry-oriented compression of FASTQ files

(2014) Łukasz Roguski et al.   BIOINFORMATICS

Data compression for sequencing data

(2013) Sebastian Deorowicz et al.   Algorithms for Molecular Biology

Toward a statistically explicit understanding of de novo sequence assembly

(2013) M. Howison et al.   BIOINFORMATICS

High-throughput DNA sequence data compression

(2013) Z. Zhu et al.   BRIEFINGS IN BIOINFORMATICS

Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies

(2013) R. Giancarlo et al.   BRIEFINGS IN BIOINFORMATICS

High-Throughput Compression of FASTQ Data with SeqDB

(2013) Mark Howison   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Compression of FASTQ and SAM Format Sequencing Data

(2013) James K. Bonfield et al.   PLoS One

SRComp: Short Read Sequence Compression Using Burstsort and Elias Omega Coding

(2013) Jeremy John Selva et al.   PLoS One

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform

(2012) A. J. Cox et al.   BIOINFORMATICS

DELIMINATE—a fast and efficient method for loss-less compression of genomic sequences

(2012) Monzoorul Haque Mohammed et al.   BIOINFORMATICS

SCALCE: boosting sequence compression algorithms using locally consistent encoding

(2012) Faraz Hach et al.   BIOINFORMATICS

KungFQ: A Simple and Powerful Approach to Compress fastq Files

(2012) Elena Grassi et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Compressive genomics

(2012) Po-Ru Loh et al.   NATURE BIOTECHNOLOGY

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

(2012) Daniel C. Jones et al.   NUCLEIC ACIDS RESEARCH

ReCoil - an algorithm for compression of extremely large datasets of dna data

(2011) Vladimir Yanovsky   Algorithms for Molecular Biology

Compression of DNA sequence reads in FASTQ format

(2011) Sebastian Deorowicz et al.   BIOINFORMATICS

Robust relative compression of genomes with random access

(2011) Sebastian Deorowicz et al.   BIOINFORMATICS

Compressing Genomic Sequence Fragments Using SlimGene

(2011) Christos Kozanitis et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

GReEn: a tool for efficient compression of genome resequencing data

(2011) Armando J. Pinho et al.   NUCLEIC ACIDS RESEARCH

Improving Transmission Efficiency of Large Sequence Alignment/Map (SAM) Files

(2011) Muhammad Nazmus Sakib et al.   PLoS One

G-SQZ: compact encoding of genomic sequence and quality data

(2010) W. Tembe et al.   BIOINFORMATICS

Data structures and compression algorithms for high-throughput sequencing technologies

(2010) Kenny Daily et al.   BMC BIOINFORMATICS

Data structures and compression algorithms for genomic sequence data

(2009) M. C. Brandon et al.   BIOINFORMATICS

Differential direct coding: a compression algorithm for nucleotide sequence data

(2009) Gregory Vey   Database-The Journal of Biological Databases and Curation

Human genomes as email attachments

(2008) Scott Christley et al.   BIOINFORMATICS

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY