LFQC: a lossless compression algorithm for FASTQ files

DSRC 2—Industry-oriented compression of FASTQ files

(2014) Łukasz Roguski et al.   BIOINFORMATICS

Compression of FASTQ and SAM Format Sequencing Data

(2013) James K. Bonfield et al.   PLoS One

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform

(2012) A. J. Cox et al.   BIOINFORMATICS

SCALCE: boosting sequence compression algorithms using locally consistent encoding

(2012) Faraz Hach et al.   BIOINFORMATICS

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

(2012) Daniel C. Jones et al.   NUCLEIC ACIDS RESEARCH

Compression of DNA sequence reads in FASTQ format

(2011) Sebastian Deorowicz et al.   BIOINFORMATICS

Transformations for the compression of FASTQ quality scores of next-generation sequencing data

(2011) Raymond Wan et al.   BIOINFORMATICS

Efficient storage of high throughput DNA sequencing data using reference-based compression

(2011) M. Hsi-Yang Fritz et al.   GENOME RESEARCH

Compressing Genomic Sequence Fragments Using SlimGene

(2011) Christos Kozanitis et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

GReEn: a tool for efficient compression of genome resequencing data

(2011) Armando J. Pinho et al.   NUCLEIC ACIDS RESEARCH

G-SQZ: compact encoding of genomic sequence and quality data

(2010) W. Tembe et al.   BIOINFORMATICS

Textual data compression in computational biology: a synopsis

(2009) R. Giancarlo et al.   BIOINFORMATICS

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH