High-throughput DNA sequence data compression

QualComp: a new lossy compressor for quality scores based on rate distortion theory

(2013) Idoia Ochoa et al.   BMC BIOINFORMATICS

Compression of FASTQ and SAM Format Sequencing Data

(2013) James K. Bonfield et al.   PLoS One

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform

(2012) A. J. Cox et al.   BIOINFORMATICS

DELIMINATE—a fast and efficient method for loss-less compression of genomic sequences

(2012) Monzoorul Haque Mohammed et al.   BIOINFORMATICS

SCALCE: boosting sequence compression algorithms using locally consistent encoding

(2012) Faraz Hach et al.   BIOINFORMATICS

BIND – An algorithm for loss-less compression of nucleotide sequence data

(2012) Tungadri Bose et al.   JOURNAL OF BIOSCIENCES

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Compressive genomics

(2012) Po-Ru Loh et al.   NATURE BIOTECHNOLOGY

Transforming clinical microbiology with bacterial genome sequencing

(2012) Xavier Didelot et al.   NATURE REVIEWS GENETICS

NGC: lossless and lossy compression of aligned high-throughput sequencing data

(2012) Niko Popitsch et al.   NUCLEIC ACIDS RESEARCH

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

(2012) Daniel C. Jones et al.   NUCLEIC ACIDS RESEARCH

The future of DNA sequence archiving

(2012) Guy Cochrane et al.   GigaScience

ReCoil - an algorithm for compression of extremely large datasets of dna data

(2011) Vladimir Yanovsky   Algorithms for Molecular Biology

Compression of DNA sequence reads in FASTQ format

(2011) Sebastian Deorowicz et al.   BIOINFORMATICS

Robust relative compression of genomes with random access

(2011) Sebastian Deorowicz et al.   BIOINFORMATICS

Transformations for the compression of FASTQ quality scores of next-generation sequencing data

(2011) Raymond Wan et al.   BIOINFORMATICS

Efficient storage of high throughput DNA sequencing data using reference-based compression

(2011) M. Hsi-Yang Fritz et al.   GENOME RESEARCH

Iterative Dictionary Construction for Compression of Large DNA Data Sets

(2011) S. Kuruppu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Harnessing cloud computing with Galaxy Cloud

(2011) Enis Afgan et al.   NATURE BIOTECHNOLOGY

A novel compression tool for efficient storage of genome resequencing data

(2011) Congmao Wang et al.   NUCLEIC ACIDS RESEARCH

GReEn: a tool for efficient compression of genome resequencing data

(2011) Armando J. Pinho et al.   NUCLEIC ACIDS RESEARCH

On the Representability of Complete Genomes by Multiple Competing Finite-Context (Markov) Models

(2011) Armando J. Pinho et al.   PLoS One

Will Computers Crash Genomics?

(2011) E. Pennisi   SCIENCE

On the Future of Genomic Data

(2011) S. D. Kahn   SCIENCE

Stronger Lempel-Ziv Based Compressed Text Indexing

(2010) Diego Arroyuelo et al.   ALGORITHMICA

G-SQZ: compact encoding of genomic sequence and quality data

(2010) W. Tembe et al.   BIOINFORMATICS

Data structures and compression algorithms for high-throughput sequencing technologies

(2010) Kenny Daily et al.   BMC BIOINFORMATICS

A survey of sequence alignment algorithms for next-generation sequencing

(2010) H. Li et al.   BRIEFINGS IN BIOINFORMATICS

Storage and Retrieval of Highly Repetitive Sequence Collections

(2010) Veli Mäkinen et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The case for cloud computing in genome informatics

(2010) Lincoln D Stein   GENOME BIOLOGY

Data structures and compression algorithms for genomic sequence data

(2009) M. C. Brandon et al.   BIOINFORMATICS

Textual data compression in computational biology: a synopsis

(2009) R. Giancarlo et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group

(2009) S.-M. Ahn et al.   GENOME RESEARCH

The NIH Human Microbiome Project

(2009) et al.   GENOME RESEARCH

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Human genomes as email attachments

(2008) Scott Christley et al.   BIOINFORMATICS

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

The potential and challenges of nanopore sequencing

(2008) Daniel Branton et al.   NATURE BIOTECHNOLOGY