Volumetric imaging of fast cellular dynamics with deep learning enhanced bioluminescence microscopy

Selective control of synaptically-connected circuit elements by all-optical synapses

(2022) Mansi Prakash et al.   Communications Biology

Spatial Image Resolution Assessment by Fourier Analysis (SIRAF)

(2022) Anders Brostrøm et al.   MICROSCOPY AND MICROANALYSIS

Synthetic cells with self-activating optogenetic proteins communicate with natural cells

(2022) Omer Adir et al.   Nature Communications

Deep‐learning‐based removal of autofluorescence and fluorescence quantification in plant‐colonizing bacteria in vivo

(2022) Xun Jiang et al.   NEW PHYTOLOGIST

Tiny but bright

(2022) Takeharu Nagai et al.   Nature Reviews Chemistry

Real-time volumetric reconstruction of biological dynamics with light-field microscopy and deep learning

(2021) Zhaoqiang Wang et al.   NATURE METHODS

Deep learning-based point-scanning super-resolution imaging

(2021) Linjing Fang et al.   NATURE METHODS

Pycro-Manager: open-source software for customized and reproducible microscope control

(2021) Henry Pinkard et al.   NATURE METHODS

Deep learning-enhanced light-field imaging with continuous validation

(2021) Nils Wagner et al.   NATURE METHODS

Single shot holographic super-resolution microscopy

(2021) Nisan Siegel et al.   OPTICS EXPRESS

Democratising deep learning for microscopy with ZeroCostDL4Mic

(2021) Lucas von Chamier et al.   Nature Communications

High-resolution Fourier light-field microscopy for volumetric multi-color live-cell imaging

(2021) Xuanwen Hua et al.   Optica

Factors Influencing Luciferase-Based Bioluminescent Imaging in Preclinical Models of Brain Tumor

(2021) Minjee Kim et al.   DRUG METABOLISM AND DISPOSITION

Deep-3D microscope: 3D volumetric microscopy of thick scattering samples using a wide-field microscope and machine learning

(2021) Bowen Li et al.   Biomedical Optics Express

Long-term imaging of the photosensitive, reef-building coral Acropora muricata using light-sheet illumination

(2020) Pierre Philippe Laissue et al.   Scientific Reports

Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction

(2019) Chinmay Belthangady et al.   NATURE METHODS

Moving beyond P values: data analysis with estimation graphics

(2019) Joses Ho et al.   NATURE METHODS

Tunable and free-form planar optics

(2019) Pascal Berto et al.   Nature Photonics

Fourier ring correlation simplifies image restoration in fluorescence microscopy

(2019) Sami Koho et al.   Nature Communications

Bioluminescence Profiling of NanoKAZ/NanoLuc Luciferase Using a Chemical Library of Coelenterazine Analogues

(2019) Eloi P Coutant et al.   CHEMISTRY-A EUROPEAN JOURNAL

Artifact-free deconvolution in light field microscopy

(2019) Anca Stefanoiu et al.   OPTICS EXPRESS

Activation of DAF-16/FOXO by reactive oxygen species contributes to longevity in long-lived mitochondrial mutants in Caenorhabditis elegans

(2018) Megan M. Senchuk et al.   PLoS Genetics

Deep-STORM: super-resolution single-molecule microscopy by deep learning

(2018) Elias Nehme et al.   Optica

Use of an Image Restoration Process to Improve Spatial Resolution in Bioluminescence Imaging

(2018) Sabrina Pesnel et al.   Molecular Imaging

Content-aware image restoration: pushing the limits of fluorescence microscopy

(2018) Martin Weigert et al.   NATURE METHODS

Deep learning enables cross-modality super-resolution in fluorescence microscopy

(2018) Hongda Wang et al.   NATURE METHODS

Trainable Nonlinear Reaction Diffusion: A Flexible Framework for Fast and Effective Image Restoration

(2017) Yunjin Chen et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Pneumatic stimulation of C. elegans mechanoreceptor neurons in a microfluidic trap

(2017) Adam L. Nekimken et al.   LAB ON A CHIP

DeconvolutionLab2: An open-source software for deconvolution microscopy

(2017) Daniel Sage et al.   METHODS

TrackMate: An open and extensible platform for single-particle tracking

(2017) Jean-Yves Tinevez et al.   METHODS

Assessing phototoxicity in live fluorescence imaging

(2017) P Philippe Laissue et al.   NATURE METHODS

STED imaging performance estimation by means of Fourier transform analysis

(2017) David Merino et al.   Biomedical Optics Express

Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm

(2017) Nishan Shettigar et al.   Science Advances

Autofluorescence as a measure of senescence in C. elegans: look to red, not blue or green

(2016) Zachary Pincus et al.   Aging-US

A method for estimating spatial resolution of real image in the Fourier domain

(2016) RYUTA MIZUTANI et al.   JOURNAL OF MICROSCOPY

Luminopsins integrate opto- and chemogenetics by using physical and biological light sources for opsin activation

(2016) Ken Berglund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Five colour variants of bright luminescent protein for real-time multicolour bioimaging

(2016) Kazushi Suzuki et al.   Nature Communications

Bioluminescence imaging in live cells and animals

(2016) Jack K. Tung et al.   Neurophotonics

Luciferins Behave Like Drugs

(2015) David M. Mofford et al.   ACS Chemical Neuroscience

Expanded palette of Nano-lanterns for real-time multicolor luminescence imaging

(2015) Akira Takai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioluminescence microscopy using a short focal-length imaging lens

(2014) K. OGOH et al.   JOURNAL OF MICROSCOPY

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

(2014) Robert Prevedel et al.   NATURE METHODS

Enhancing the performance of the light field microscope using wavefront coding

(2014) Noy Cohen et al.   OPTICS EXPRESS

Engineered Luciferase Reporter from a Deep Sea Shrimp Utilizing a Novel Imidazopyrazinone Substrate

(2012) Mary P. Hall et al.   ACS Chemical Biology

Novel Heterocyclic Analogues of Firefly Luciferin

(2012) Carolyn C. Woodroofe et al.   BIOCHEMISTRY

Bioluminescence based in vivo screening technologies

(2012) Madhura Kelkar et al.   CURRENT OPINION IN PHARMACOLOGY

TULIPs: tunable, light-controlled interacting protein tags for cell biology

(2012) Devin Strickland et al.   NATURE METHODS

Basic Caenorhabditis elegans Methods: Synchronization and Observation

(2012) Montserrat Porta-de-la-Riva et al.   Jove-Journal of Visualized Experiments

The Multipurpose 15-Protofilament Microtubules in C. elegans Have Specific Roles in Mechanosensation

(2009) Alexander Bounoutas et al.   CURRENT BIOLOGY