Phylotranscriptomics Shed Light on Intrageneric Relationships and Historical Biogeography of Ceratozamia (Cycadales)

Ceratozamia oliversacksii (Zamiaceae), a new species of gymnosperm from western Oaxaca, Mexico

(2022) Lilí Martínez-Domínguez et al.   KEW BULLETIN

Phylotranscriptomics reveal the spatio-temporal distribution and morphological evolution of Macrozamia, an Australian endemic genus of Cycadales

(2022) Sadaf Habib et al.   ANNALS OF BOTANY

Phylotranscriptomics of liverworts: revisiting the backbone phylogeny and ancestral gene duplications

(2022) Shanshan Dong et al.   ANNALS OF BOTANY

Monograph of Ceratozamia (Zamiaceae, Cycadales): an endangered genus

(2022) Lilí Martínez-Domínguez et al.   PhytoKeys

Palaeoevironmental reconstruction based on palynomorphs from the upper Oligocene San Gregorio Formation (core LB1), in a semiarid coastal marine setting, Baja California Sur, Mexico

(2021) Elia Ramírez-Arriaga et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Ceratozamia sanchezae (Zamiaceae): a new cycad species from Chiapas Highlands (Mexico)

(2021) JOSÉ SAID GUTIÉRREZ-ORTEGA et al.   Phytotaxa

A transcriptome-based study on the phylogeny and evolution for taxonomic controversial subfamily Apioideae (Apiaceae)

(2020) Jun Wen et al.   ANNALS OF BOTANY

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A revision of the Ceratozamia miqueliana (Zamiaceae) species complex based on analyses of leaflet anatomical characters

(2020) Andrew P. Vovides et al.   FLORA

A novelty in Ceratozamia (Zamiaceae, Cycadales) from the Sierra Madre del Sur, Mexico: biogeographic and morphological patterns, DNA barcoding and phenology

(2020) Lilí Martínez-Domínguez et al.   PhytoKeys

Dioon oaxacensis (Zamiaceae): a new cycad species from the arid central valleys of Oaxaca (Mexico)

(2020) JOSÉ SAID GUTIÉRREZ-ORTEGA et al.   Phytotaxa

A Time-Calibrated Species Tree Phylogeny of the New World Cycad Genus Zamia L. (Zamiaceae, Cycadales)

(2019) Michael Calonje et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Evolution of Ceratozamia cycads: A proximate-ultimate approach

(2019) Anwar Medina-Villarreal et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

(2018) Chao Zhang et al.   BMC BIOINFORMATICS

Evolutionary history of the flora of Mexico: Dry forests cradles and museums of endemism

(2018) Victoria Sosa et al.   Journal of Systematics and Evolution

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Cryptic diversity, sympatry, and other integrative taxonomy scenarios in the Mexican Ceratozamia miqueliana complex (Zamiaceae)

(2017) Lilí Martínez-Domínguez et al.   ORGANISMS DIVERSITY & EVOLUTION

Integrating biogeography, threat and evolutionary data to explore extinction crisis in the taxonomic group of cycads

(2017) Kowiyou Yessoufou et al.   Ecology and Evolution

Morphometric and geographical variation in theCeratozamia mexicanaBrongn. (Zamiaceae) complex: evolutionary and taxonomic implications

(2016) Anwar Medina-Villarreal et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Integrative taxonomy of Mexican cycads: biogeography, morphology and DNA barcoding corroborate a new sympatric species in Ceratozamia (Zamiaceae)

(2016) LILÍ MARTÍNEZ-DOMÍNGUEZ et al.   Phytotaxa

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating

(2015) Fabien L Condamine et al.   BMC EVOLUTIONARY BIOLOGY

Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

(2015) Chien-Hsun Huang et al.   MOLECULAR BIOLOGY AND EVOLUTION

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Palynological evidence for Middle Miocene vegetation in the Tehuacán Formation of Puebla, Mexico

(2014) E. Ramírez-Arriaga et al.   PALYNOLOGY

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

(2014) Liping Zeng et al.   Nature Communications

Phylogeny of the cycads based on multiple single-copy nuclear genes: congruence of concatenated parsimony, likelihood and species tree inference methods

(2013) Dayana E. Salas-Leiva et al.   ANNALS OF BOTANY

Morphology and Leaflet Anatomy of the Ceratozamia norstogii (Zamiaceae, Cycadales) Species Complex in Mexico with Comments on Relationships and Speciation

(2013) Miguel A. Pérez-Farrera et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

treePL: divergence time estimation using penalized likelihood for large phylogenies

(2012) Stephen A. Smith et al.   BIOINFORMATICS

What is Ceratozamia brevifrons (Zamiaceae)?

(2012) Andrew P. Vovides et al.   BRITTONIA

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

(2012) Ning Zhang et al.   NEW PHYTOLOGIST

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Recent Synchronous Radiation of a Living Fossil

(2011) N. S. Nagalingum et al.   SCIENCE

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

A reassessment of theCeratozamia miquelianaspecies complex (Zamiaceae) of southeastern Mexico, with comments on species relationships

(2009) Miguel A. Perez‐Farrera et al.   SYSTEMATICS AND BIODIVERSITY

A new species of Ceratozamia (Zamiaceae) from Oaxaca, Mexico with comments on habitat and relationships

(2008) ANDREW P. VOVIDES et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY