De novo genes with an lncRNA origin encode unique human brain developmental functionality
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
De novo genes with an lncRNA origin encode unique human brain developmental functionality
Authors
Keywords
-
Journal
Nature Ecology & Evolution
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-01-03
DOI
10.1038/s41559-022-01925-6
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Polyadenylation-related isoform switching in human evolution revealed by full-length transcript structure
- (2021) Yumei Li et al. BRIEFINGS IN BIOINFORMATICS
- An early cell shape transition drives evolutionary expansion of the human forebrain
- (2021) Silvia Benito-Kwiecinski et al. CELL
- U1 snRNP regulates chromatin retention of noncoding RNAs
- (2020) Yafei Yin et al. NATURE
- Long Noncoding RNAs: Molecular Modalities to Organismal Functions
- (2020) John L. Rinn et al. Annual Review of Biochemistry
- Gene Architecture and Sequence Composition Underpin Selective Dependency of Nuclear Export of Long RNAs on NXF1 and the TREX Complex
- (2020) Binyamin Zuckerman et al. MOLECULAR CELL
- Human-specific ARHGAP11B increases size and folding of primate neocortex in the fetal marmoset
- (2020) Michael Heide et al. SCIENCE
- Mechanisms of Long Noncoding RNA Nuclear Retention
- (2020) Chun-Jie Guo et al. TRENDS IN BIOCHEMICAL SCIENCES
- Gene regulation by long non-coding RNAs and its biological functions
- (2020) Luisa Statello et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution
- (2019) Alex A. Pollen et al. CELL
- Nuclear retention element recruits U1 snRNP components to restrain spliced lncRNAs in the nucleus
- (2019) Sikandar Azam et al. RNA Biology
- Turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations
- (2019) Éléonore Durand et al. GENOME RESEARCH
- Gene expression across mammalian organ development
- (2019) Margarida Cardoso-Moreira et al. NATURE
- Organoid single-cell genomic atlas uncovers human-specific features of brain development
- (2019) Sabina Kanton et al. NATURE
- Enhancers Facilitate the Birth of De Novo Genes and Gene Integration into Regulatory Networks
- (2019) Paco Majic et al. MOLECULAR BIOLOGY AND EVOLUTION
- Human-Specific ARHGAP11B Acts in Mitochondria to Expand Neocortical Progenitors by Glutaminolysis
- (2019) Takashi Namba et al. NEURON
- Human-Specific NOTCH2NL Genes Expand Cortical Neurogenesis through Delta/Notch Regulation
- (2018) Ikuo K. Suzuki et al. CELL
- Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis
- (2018) Ian T. Fiddes et al. CELL
- A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex
- (2018) Suijuan Zhong et al. NATURE
- Nuclear export of RNA: Different sizes, shapes and functions
- (2018) Tobias Williams et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes
- (2018) Thomas Hennig et al. PLoS Pathogens
- Sequences enriched in Alu repeats drive nuclear localization of long RNAs in human cells
- (2018) Yoav Lubelsky et al. NATURE
- A Chemical Recipe for Generation of Clinical-Grade Striatal Neurons from hESCs
- (2018) Menghua Wu et al. Stem Cell Reports
- Incipient de novo genes can evolve from frozen accidents that escaped rapid transcript turnover
- (2018) Jonathan F. Schmitz et al. Nature Ecology & Evolution
- Prediction of LncRNA Subcellular Localization with Deep Learning from Sequence Features
- (2018) Brian L. Gudenas et al. Scientific Reports
- Gradients in cytoarchitectural landscapes of the isocortex: Diprotodont marsupials in comparison to eutherian mammals
- (2017) Christine J. Charvet et al. JOURNAL OF COMPARATIVE NEUROLOGY
- The functions and unique features of long intergenic non-coding RNA
- (2017) Julia D. Ransohoff et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Young genes are highly disordered as predicted by the preadaptation hypothesis of de novo gene birth
- (2017) Benjamin A. Wilson et al. Nature Ecology & Evolution
- Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure
- (2016) Xuyu Qian et al. CELL
- Coupling pre-mRNA splicing and 3′ end formation to mRNA export: alternative ways to punch the nuclear export clock
- (2016) Reyad A. Elbarbary et al. GENES & DEVELOPMENT
- Unique features of long non-coding RNA biogenesis and function
- (2016) Jeffrey J. Quinn et al. NATURE REVIEWS GENETICS
- Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development
- (2016) Tomasz J. Nowakowski et al. NEURON
- Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells
- (2016) Joana Carlevaro-Fita et al. RNA
- The hominoid-specific gene TBC1D3 promotes generation of basal neural progenitors and induces cortical folding in mice
- (2016) Xiang-Chun Ju et al. eLife
- Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development
- (2016) Felipe Mora-Bermúdez et al. eLife
- TensorFlow: Biology’s Gateway to Deep Learning?
- (2016) Ladislav Rampasek et al. Cell Systems
- Deep learning
- (2015) Yann LeCun et al. NATURE
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture
- (2015) Anca M Paşca et al. NATURE METHODS
- New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation
- (2015) Aoife McLysaght et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion
- (2015) M. Florio et al. SCIENCE
- Emergence, Retention and Selection: A Trilogy of Origination for Functional De Novo Proteins from Ancestral LncRNAs in Primates
- (2015) Jia-Yu Chen et al. PLoS Genetics
- Origins of De Novo Genes in Human and Chimpanzee
- (2015) Jorge Ruiz-Orera et al. PLoS Genetics
- Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
- (2015) Moran N Cabili et al. GENOME BIOLOGY
- The Consensus 5' Splice Site Motif Inhibits mRNA Nuclear Export
- (2015) Eliza S. Lee et al. PLoS One
- Impact of regulatory variation from RNA to protein
- (2014) A. Battle et al. SCIENCE
- Origin and Spread of de Novo Genes in Drosophila melanogaster Populations
- (2014) L. Zhao et al. SCIENCE
- Evidence for the biogenesis of more than 1,000 novel human microRNAs
- (2014) Marc R Friedländer et al. GENOME BIOLOGY
- lincRNAs: Genomics, Evolution, and Mechanisms
- (2013) Igor Ulitsky et al. CELL
- Human-specific regulation of MeCP2 levels in fetal brains by microRNA miR-483-5p
- (2013) K. Han et al. GENES & DEVELOPMENT
- Integration of New Genes into Cellular Networks, and Their Structural Maturation
- (2013) G. Abrusan GENETICS
- Promoter directionality is controlled by U1 snRNP and polyadenylation signals
- (2013) Albert E. Almada et al. NATURE
- The Genotype-Tissue Expression (GTEx) project
- (2013) John Lonsdale et al. NATURE GENETICS
- New genes as drivers of phenotypic evolution
- (2013) Sidi Chen et al. NATURE REVIEWS GENETICS
- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- De Novo ORFs in Drosophila Are Important to Organismal Fitness and Evolved Rapidly from Previously Non-coding Sequences
- (2013) Josephine A. Reinhardt et al. PLoS Genetics
- Evolution of Human-Specific Neural SRGAP2 Genes by Incomplete Segmental Duplication
- (2012) Megan Y. Dennis et al. CELL
- Proto-genes and de novo gene birth
- (2012) Anne-Ruxandra Carvunis et al. NATURE
- Genomic variation landscape of the human gut microbiome
- (2012) Siegfried Schloissnig et al. NATURE
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Evolution of the human-specific microRNA miR-941
- (2012) Hai Yang Hu et al. Nature Communications
- Hominoid-Specific De Novo Protein-Coding Genes Originating from Long Non-Coding RNAs
- (2012) Chen Xie et al. PLoS Genetics
- Accelerated Recruitment of New Brain Development Genes into the Human Genome
- (2011) Yong E. Zhang et al. PLOS BIOLOGY
- Understanding mechanisms underlying human gene expression variation with RNA sequencing
- (2010) Joseph K. Pickrell et al. NATURE
- A Human-Specific De Novo Protein-Coding Gene Associated with Human Brain Functions
- (2010) Chuan-Yun Li et al. PLoS Computational Biology
- Emergence of a New Gene from an Intergenic Region
- (2009) Tobias J.A.J. Heinen et al. CURRENT BIOLOGY
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- De Novo Origination of a New Protein-Coding Gene in Saccharomyces cerevisiae
- (2008) J. Cai et al. GENETICS
- Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
- (2008) B. Paten et al. GENOME RESEARCH
- Origin of Primate Orphan Genes: A Comparative Genomics Approach
- (2008) M. Toll-Riera et al. MOLECULAR BIOLOGY AND EVOLUTION
- Splicing promotes rapid and efficient mRNA export in mammalian cells
- (2008) P. Valencia et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now