HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes
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Title
HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes
Authors
Keywords
DNA transcription, Dogs, Thermal stresses, Chromatin, Histones, Gene expression, Cellular stress responses, Transcriptional termination
Journal
PLoS Pathogens
Volume 14, Issue 3, Pages e1006954
Publisher
Public Library of Science (PLoS)
Online
2018-03-27
DOI
10.1371/journal.ppat.1006954
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Note: Only part of the references are listed.- Comparative analysis reveals genomic features of stress-induced transcriptional readthrough
- (2017) Anna Vilborg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid Genome-wide Recruitment of RNA Polymerase II Drives Transcription, Splicing, and Translation Events during T Cell Responses
- (2017) Kathrin Davari et al. Cell Reports
- A comprehensive analysis of 3′ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation
- (2016) Andreas J. Gruber et al. GENOME RESEARCH
- Transcriptional termination in mammals: Stopping the RNA polymerase II juggernaut
- (2016) N. J. Proudfoot SCIENCE
- ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
- (2015) Guangchuang Yu et al. BIOINFORMATICS
- ContextMap 2: fast and accurate context-based RNA-seq mapping
- (2015) Thomas Bonfert et al. BMC BIOINFORMATICS
- Widespread Inducible Transcription Downstream of Human Genes
- (2015) Anna Vilborg et al. MOLECULAR CELL
- Transcription termination and the control of the transcriptome: why, where and how to stop
- (2015) Odil Porrua et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Histone exchange, chromatin structure and the regulation of transcription
- (2015) Swaminathan Venkatesh et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Widespread disruption of host transcription termination in HSV-1 infection
- (2015) Andrzej J. Rutkowski et al. Nature Communications
- Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma
- (2015) Ana R Grosso et al. eLife
- Histone Deacetylases and Phosphorylated Polymerase II C-Terminal Domain Recruit Spt6 for Cotranscriptional Histone Reassembly
- (2014) B. B. Burugula et al. MOLECULAR AND CELLULAR BIOLOGY
- MiR-23a Facilitates the Replication of HSV-1 through the Suppression of Interferon Regulatory Factor 1
- (2014) Jing Ru et al. PLoS One
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- The RNA Polymerase II Carboxy-Terminal Domain (CTD) Code
- (2013) Dirk Eick et al. CHEMICAL REVIEWS
- A compendium of RNA-binding motifs for decoding gene regulation
- (2013) Debashish Ray et al. NATURE
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Merging high-quality biochemical fractionation with a refined flow cytometry approach to monitor nucleocytoplasmic protein expression throughout the unperturbed mammalian cell cycle
- (2013) Margit Rosner et al. Nature Protocols
- Inhibition of cdk9 during Herpes Simplex Virus 1 Infection Impedes Viral Transcription
- (2013) Mark Ou et al. PLoS One
- Human housekeeping genes, revisited
- (2013) Eli Eisenberg et al. TRENDS IN GENETICS
- The Differential Mobilization of Histones H3.1 and H3.3 by Herpes Simplex Virus 1 Relates Histone Dynamics to the Assembly of Viral Chromatin
- (2013) Kristen L. Conn et al. PLoS Pathogens
- Virus-encoded endonucleases: expected and novel functions
- (2013) G. Sullivan Read Wiley Interdisciplinary Reviews-RNA
- CTD Tyrosine Phosphorylation Impairs Termination Factor Recruitment to RNA Polymerase II
- (2012) A. Mayer et al. SCIENCE
- Real-time Transcriptional Profiling of Cellular and Viral Gene Expression during Lytic Cytomegalovirus Infection
- (2012) Lisa Marcinowski et al. PLoS Pathogens
- The many roles of the highly interactive HSV protein ICP27, a key regulator of infection
- (2011) Rozanne M Sandri-Goldin Future Microbiology
- Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
- (2011) Michal Rabani et al. NATURE BIOTECHNOLOGY
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Interferon Regulatory Factor-1 (IRF-1) Shapes Both Innate and CD8+ T Cell Immune Responses against West Nile Virus Infection
- (2011) James D. Brien et al. PLoS Pathogens
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Metabolic tagging and purification of nascent RNA: implications for transcriptomics
- (2009) Caroline C. Friedel et al. Molecular BioSystems
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Co-transcriptional splicing of constitutive and alternative exons
- (2009) A. Pandya-Jones et al. RNA
- F-Seq: a feature density estimator for high-throughput sequence tags
- (2008) A. P. Boyle et al. BIOINFORMATICS
- The many roles of the regulatory protein ICP27 during herpes simplex virus infection
- (2008) Rozanne et al. Frontiers in Bioscience-Landmark
- Linker Histones Are Mobilized during Infection with Herpes Simplex Virus Type 1
- (2008) K. L. Conn et al. JOURNAL OF VIROLOGY
- High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
- (2008) L. Dolken et al. RNA
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