Dependence of diffusion in Escherichia coli cytoplasm on protein size, environmental conditions, and cell growth

Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins

(2021) Mathew Stracy et al.   MOLECULAR CELL

Measurement of Protein Mobility in Listeria monocytogenes Reveals a Unique Tolerance to Osmotic Stress and Temperature Dependence of Diffusion

(2021) Buu Minh Tran et al.   Frontiers in Microbiology

Bacterial cyclic diguanylate signaling networks sense temperature

(2021) Henrik Almblad et al.   Nature Communications

Transcription-dependent confined diffusion of enzymes within subcellular spaces of the bacterial cytoplasm

(2021) Daniel A. O. Rotter et al.   BMC BIOLOGY

Robust surface-to-mass coupling and turgor-dependent cell width determine bacterial dry-mass density

(2021) Enno R. Oldewurtel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cooperatively enhanced reactivity and “stabilitaxis” of dissociating oligomeric proteins

(2020) Jaime Agudo-Canalejo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fluorescence Correlation Spectroscopy and Photon Counting Histograms in Finite, Bounded Domains

(2020) Yanfei Jiang et al.   BIOPHYSICAL JOURNAL

Elucidating the Origin of Heterogeneous Anomalous Diffusion in the Cytoplasm of Mammalian Cells

(2020) Adal Sabri et al.   PHYSICAL REVIEW LETTERS

Cytosolic Crowding Drives the Dynamics of Both Genome and Cytosol in Escherichia coli Challenged with Sub-lethal Antibiotic Treatments

(2020) Michal Wlodarski et al.   iScience

Cellular Control of Viscosity Counters Changes in Temperature and Energy Availability

(2020) Laura B. Persson et al.   CELL

Decreased Effective Macromolecular Crowding in Escherichia coli Adapted to Hyperosmotic Stress

(2019) Boqun Liu et al.   JOURNAL OF BACTERIOLOGY

Resolving Cytosolic Diffusive States in Bacteria by Single-Molecule Tracking

(2019) Julian Rocha et al.   BIOPHYSICAL JOURNAL

Dynamic cluster formation determines viscosity and diffusion in dense protein solutions

(2019) Sören von Bülow et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced Diffusion of Catalytically Active Enzymes

(2019) Yifei Zhang et al.   ACS Central Science

Understanding Protein Mobility in Bacteria by Tracking Single Molecules

(2018) Achillefs N. Kapanidis et al.   JOURNAL OF MOLECULAR BIOLOGY

Non-specific interactions govern cytosolic diffusion of nanosized objects in mammalian cells

(2018) Fred Etoc et al.   NATURE MATERIALS

Enhanced Diffusion and Chemotaxis at the Nanoscale

(2018) Jaime Agudo-Canalejo et al.   ACCOUNTS OF CHEMICAL RESEARCH

Microorganisms maintain crowding homeostasis

(2017) Jonas van den Berg et al.   NATURE REVIEWS MICROBIOLOGY

Physicochemical code for quinary protein interactions inEscherichia coli

(2017) Xin Mu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A dynamic and adaptive network of cytosolic interactions governs protein export by the T3SS injectisome

(2017) Andreas Diepold et al.   Nature Communications

Ribosome surface properties may impose limits on the nature of the cytoplasmic proteome

(2017) Paul E Schavemaker et al.   eLife

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

(2016) David Legland et al.   BIOINFORMATICS

On the Equivalence of FCS and FRAP: Simultaneous Lipid Membrane Measurements

(2016) Radek Macháň et al.   BIOPHYSICAL JOURNAL

MreB Orientation Correlates with Cell Diameter in Escherichia coli

(2016) Nikolay Ouzounov et al.   BIOPHYSICAL JOURNAL

Escherichia coli as a model active colloid: A practical introduction

(2016) Jana Schwarz-Linek et al.   COLLOIDS AND SURFACES B-BIOINTERFACES

Macromolecular Crowding In Vitro , In Vivo , and In Between

(2016) Germán Rivas et al.   TRENDS IN BIOCHEMICAL SCIENCES

A glucose-starvation response regulates the diffusion of macromolecules

(2016) Ryan P Joyner et al.   eLife

Effects of Tween 80 on Growth and Biofilm Formation in Laboratory Media

(2016) Christina K. Nielsen et al.   Frontiers in Microbiology

High-throughput fluorescence correlation spectroscopy enables analysis of proteome dynamics in living cells

(2015) Malte Wachsmuth et al.   NATURE BIOTECHNOLOGY

Enhanced Diffusion of Enzymes that Catalyze Exothermic Reactions

(2015) Ramin Golestanian   PHYSICAL REVIEW LETTERS

Fluorescence recovery after photobleaching in material and life sciences: putting theory into practice

(2015) Niklas Lorén et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Universal Approach to FRAP Analysis of Arbitrary Bleaching Patterns

(2015) Daniel Blumenthal et al.   Scientific Reports

Molecular weight–gyration radius relation of globular proteins: a comparison of light scattering, small-angle X-ray scattering and structure-based data

(2015) Detlef-M. Smilgies et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Time-dependent effects of transcription- and translation-halting drugs on the spatial distributions of theEscherichia colichromosome and ribosomes

(2014) Somenath Bakshi et al.   MOLECULAR MICROBIOLOGY

Single-particle tracking reveals that free ribosomal subunits are not excluded from the Escherichia coli nucleoid

(2014) A. Sanamrad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing short-range protein Brownian motion in the cytoplasm of living cells

(2014) Carmine Di Rienzo et al.   Nature Communications

The Shape of Protein Crowders is a Major Determinant of Protein Diffusion

(2013) Jessica Balbo et al.   BIOPHYSICAL JOURNAL

The Bacterial Cytoplasm Has Glass-like Properties and Is Fluidized by Metabolic Activity

(2013) Bradley R. Parry et al.   CELL

How crowded is the prokaryotic cytoplasm?

(2013) Jan Spitzer et al.   FEBS LETTERS

The N-degradome ofEscherichia coli

(2013) Matthew A. Humbard et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dynamic enzyme docking to the ribosome coordinates N-terminal processing with polypeptide folding

(2013) Arzu Sandikci et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Molecular crowding limits translation and cell growth

(2013) S. Klumpp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microanatomy at Cellular Resolution and Spatial Order of Physiological Differentiation in a Bacterial Biofilm

(2013) D. O. Serra et al.   mBio

Biologistics—Diffusion coefficients for complete proteome of Escherichia coli

(2012) Tomasz Kalwarczyk et al.   BIOINFORMATICS

In Vivo Biochemistry in Bacterial Cells Using FRAP: Insight into the Translation Cycle

(2012) Paula Montero Llopis et al.   BIOPHYSICAL JOURNAL

Physical map and dynamics of the chaperone network in Escherichia coli

(2012) Mohit Kumar et al.   MOLECULAR MICROBIOLOGY

Polymer Dynamics, Fluorescence Correlation Spectroscopy, and the Limits of Optical Resolution

(2012) Jörg Enderlein   PHYSICAL REVIEW LETTERS

Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci

(2012) S. C. Weber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Subdiffraction-Limit Study of Kaede Diffusion and Spatial Distribution in Live Escherichia coli

(2011) Somenath Bakshi et al.   BIOPHYSICAL JOURNAL

Fluorescence Correlation Spectroscopy: Past, Present, Future

(2011) Elliot L. Elson   BIOPHYSICAL JOURNAL

Thermal Robustness of Signaling in Bacterial Chemotaxis

(2011) Olga Oleksiuk et al.   CELL

The ClpS Adaptor Mediates Staged Delivery of N-End Rule Substrates to the AAA+ ClpAP Protease

(2011) Giselle Román-Hernández et al.   MOLECULAR CELL

Single-molecule investigations of the stringent response machinery in living bacterial cells

(2011) B. P. English et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mobility of Cytoplasmic, Membrane, and DNA-Binding Proteins in Escherichia coli

(2010) Mohit Kumar et al.   BIOPHYSICAL JOURNAL

Macromolecule diffusion and confinement in prokaryotic cells

(2010) Jacek T Mika et al.   CURRENT OPINION IN BIOTECHNOLOGY

Size Dependence of Protein Diffusion in the Cytoplasm of Escherichia coli

(2010) A. Nenninger et al.   JOURNAL OF BACTERIOLOGY

Molecular sieving properties of the cytoplasm of Escherichia coli and consequences of osmotic stress

(2010) Jacek T. Mika et al.   MOLECULAR MICROBIOLOGY

New International Formulation for the Viscosity of H2O

(2009) M. L. Huber et al.   JOURNAL OF PHYSICAL AND CHEMICAL REFERENCE DATA

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Crowding Effects on Diffusion in Solutions and Cells

(2008) James A. Dix et al.   Annual Review of Biophysics

Macromolecular Crowding and Size Effects on Probe Microviscosity

(2008) Aron B. Goins et al.   BIOPHYSICAL JOURNAL

Cytoplasmic Protein Mobility in Osmotically Stressed Escherichia coli

(2008) M. C. Konopka et al.   JOURNAL OF BACTERIOLOGY

Sampling the Cell with Anomalous Diffusion—The Discovery of Slowness

(2007) Gernot Guigas et al.   BIOPHYSICAL JOURNAL