Fluorescence recovery after photobleaching in material and life sciences: putting theory into practice

Interactions and Diffusion in Fine-Stranded β-lactoglobulin Gels Determined via FRAP and Binding

(2014) Erich Schuster et al.   BIOPHYSICAL JOURNAL

Single-particle tracking for studying nanomaterial dynamics: applications and fundamentals in drug delivery

(2014) Elisa Zagato et al.   Nanomedicine

Precisely and accurately localizing single emitters in fluorescence microscopy

(2014) Hendrik Deschout et al.   NATURE METHODS

Presynaptic and Postsynaptic Scaffolds

(2014) Noam E. Ziv et al.   NEUROSCIENTIST

Quantitation of Glucocorticoid Receptor DNA-Binding Dynamics by Single-Molecule Microscopy and FRAP

(2014) Femke L. Groeneweg et al.   PLoS One

Molecular diffusion and binding analyzed with FRAP

(2014) Malte Wachsmuth   PROTOPLASMA

Membrane curvature based lipid sorting using a nanoparticle patterned substrate

(2014) Joshua C. Black et al.   Soft Matter

Measurement of Three-Dimensional Anisotropic Diffusion by Multiphoton Fluorescence Recovery after Photobleaching

(2013) Changcheng Shi et al.   ANNALS OF BIOMEDICAL ENGINEERING

Heterogeneity in maize starch granule internal architecture deduced from diffusion of fluorescent dextran probes

(2013) Sushil Dhital et al.   CARBOHYDRATE POLYMERS

Molecular viewing of actin polymerizing actions and beyond: Combination analysis of single-molecule speckle microscopy with modeling, FRAP and s-FDAP (sequential fluorescence decay after photoactivation)

(2013) Naoki Watanabe et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Distinguishing free and anomalous diffusion by rectangular fluorescence recovery after photobleaching: a Monte Carlo study

(2013) Ben De Clercq et al.   JOURNAL OF BIOMEDICAL OPTICS

Transport phenomena in a model cheese: The influence of the charge and shape of solutes on diffusion

(2013) J.V.C. Silva et al.   JOURNAL OF DAIRY SCIENCE

Revisiting Point FRAP to Quantitatively Characterize Anomalous Diffusion in Live Cells

(2013) Matthew K. Daddysman et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A multi-scale study of enzyme diffusion in macromolecular solutions and physical gels of pectin polysaccharides

(2013) Pauline Videcoq et al.   Soft Matter

Microstructural, mechanical and mass transport properties of isotropic and capillary alginate gels

(2013) Erich Schuster et al.   Soft Matter

Aquaporin Trafficking in Plant Cells: An Emerging Membrane-Protein Model

(2013) Doan-Trung Luu et al.   TRAFFIC

Ensemble and single particle fluorimetric techniques in concerted action to study the diffusion and aggregation of the glycine receptor α3 isoforms in the cell plasma membrane

(2012) Kristof Notelaers et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Minimizing the Impact of Photoswitching of Fluorescent Proteins on FRAP Analysis

(2012) Florian Mueller et al.   BIOPHYSICAL JOURNAL

In Vivo Biochemistry in Bacterial Cells Using FRAP: Insight into the Translation Cycle

(2012) Paula Montero Llopis et al.   BIOPHYSICAL JOURNAL

First assessment of diffusion coefficients in model cheese by fluorescence recovery after photobleaching (FRAP)

(2012) J. Floury et al.   FOOD CHEMISTRY

Probe diffusion in κ-carrageenan gels determined by fluorescence recovery after photobleaching

(2012) Joel Hagman et al.   FOOD HYDROCOLLOIDS

Relation between the gel structure and the mobility of tracers in globular protein gels

(2012) Gireeshkumar Balakrishnan et al.   JOURNAL OF COLLOID AND INTERFACE SCIENCE

A benchmark for chromatin binding measurements in live cells

(2012) Davide Mazza et al.   NUCLEIC ACIDS RESEARCH

Regulation of Signaling at Regions of Cell-Cell Contact by Endoplasmic Reticulum-Bound Protein-Tyrosine Phosphatase 1B

(2012) Fawaz G. Haj et al.   PLoS One

FRAP Analysis: Accounting for Bleaching during Image Capture

(2012) Jun Wu et al.   PLoS One

Quantifying transient binding of ISWI chromatin remodelers in living cells by pixel-wise photobleaching profile evolution analysis

(2012) F. Erdel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Raster image correlation spectroscopy as a novel tool to study interactions of macromolecules with nanofiber scaffolds

(2011) S.C.P. Norris et al.   Acta Biomaterialia

A Nonfitting Method Using a Spatial Sine Window Transform for Inhomogeneous Effective-Diffusion Measurements by FRAP

(2011) Darya Y. Orlova et al.   BIOPHYSICAL JOURNAL

Proposed Correction to Feder's Anomalous Diffusion FRAP Equations

(2011) Minchul Kang et al.   BIOPHYSICAL JOURNAL

Hyperviscous airway periciliary and mucous liquid layers in cystic fibrosis measured by confocal fluorescence photobleaching

(2011) Nico Derichs et al.   FASEB JOURNAL

Effect of pre-crystallization process and solid particle addition on microstructure in chocolate model systems

(2011) L. Svanberg et al.   FOOD RESEARCH INTERNATIONAL

Studying Smad2 intranuclear diffusion dynamics by mathematical modelling of FRAP experiments

(2011) Vinicio González-Pérez et al.   Integrative Biology

Fluorescence recovery after photobleaching on the confocal laser-scanning microscope: generalized model without restriction on the size of the photobleached disk

(2011) Nick Smisdom et al.   JOURNAL OF BIOMEDICAL OPTICS

Protein macromonomers containing reduction-sensitive linkers for covalent immobilization and glutathione triggered release from dextran hydrogels

(2011) Ellen Verheyen et al.   JOURNAL OF CONTROLLED RELEASE

Single-particle Tracking as a Quantitative Microscopy-based Approach to Unravel Cell Entry Mechanisms of Viruses and Pharmaceutical Nanoparticles

(2011) Nadia Ruthardt et al.   MOLECULAR THERAPY

Multiphoton fluorescence recovery after photobleaching in bounded systems

(2011) Kelley D. Sullivan et al.   PHYSICAL REVIEW E

Simultaneous Measurement of Anisotropic Solute Diffusivity and Binding Reaction Rates in Biological Tissues by FRAP

(2010) Francesco Travascio et al.   ANNALS OF BIOMEDICAL ENGINEERING

Biodegradable Hydrogels for Time-Controlled Release of Tethered Peptides or Proteins

(2010) Ferdinand Brandl et al.   BIOMACROMOLECULES

Effect of Gelatin Gelation Kinetics on Probe Diffusion Determined by FRAP and Rheology

(2010) Joel Hagman et al.   BIOMACROMOLECULES

A Quantitative Approach to Analyze Binding Diffusion Kinetics by Confocal FRAP

(2010) Minchul Kang et al.   BIOPHYSICAL JOURNAL

Diffusion Anisotropy in Collagen Gels and Tumors: The Effect of Fiber Network Orientation

(2010) Triantafyllos Stylianopoulos et al.   BIOPHYSICAL JOURNAL

Diffusion and viscosity in arabinoxylan solutions: Implications for nutrition

(2010) Kinnari J. Shelat et al.   CARBOHYDRATE POLYMERS

FRAP and kinetic modeling in the analysis of nuclear protein dynamics: what do we really know?

(2010) Florian Mueller et al.   CURRENT OPINION IN CELL BIOLOGY

Conditions for using FRAP as a quantitative technique-Influence of the bleaching protocol

(2010) Dominika O. Trembecka et al.   CYTOMETRY PART A

Dissecting the binding mechanism of the linker histone in live cells: an integrated FRAP analysis

(2010) Timothy J Stasevich et al.   EMBO JOURNAL

Diffusion of Active Proteins into Fish Meat To Minimize Proteolytic Degradation

(2010) Patricio A. Carvajal-Rondanelli et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A pixel-based likelihood framework for analysis of fluorescence recovery after photobleaching data

(2010) J.K. JONASSON et al.   JOURNAL OF MICROSCOPY

Diffusion of α-Chymotrypsin in Solution-Crowded Media. A Fluorescence Recovery after Photobleaching Study

(2010) Isabel Pastor et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A class of exact solutions for biomacromolecule diffusion–reaction in live cells

(2010) Kouroush Sadegh Zadeh et al.   JOURNAL OF THEORETICAL BIOLOGY

Raster image correlation spectroscopy in live cells

(2010) Molly J Rossow et al.   Nature Protocols

Straightforward FRAP for quantitative diffusion measurements with a laser scanning microscope

(2010) Hendrik Deschout et al.   OPTICS EXPRESS

Quantitative Kinetic Study of the Actin-Bundling Protein L-Plastin and of Its Impact on Actin Turn-Over

(2010) Ziad Al Tanoury et al.   PLoS One

The biochemistry of RNA metabolism studied in situ

(2010) Jeffrey A. Nickerson   RNA Biology

Determination of local diffusion properties in heterogeneous biomaterials

(2009) Niklas Lorén et al.   ADVANCES IN COLLOID AND INTERFACE SCIENCE

Molecular dynamics of histone H1This paper is one of a selection of papers published in this Special Issue, entitled CSBMCB’s 51st Annual Meeting – Epigenetics and Chromatin Dynamics, and has undergone the Journal’s usual peer review process.

(2009) Nikhil Raghuram et al.   Biochemistry and Cell Biology

Surface analysis of membrane dynamics

(2009) Ana J. García-Sáez et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Multiscale Analysis of Dynamics and Interactions of Heterochromatin Protein 1 by Fluorescence Fluctuation Microscopy

(2009) Katharina P. Müller et al.   BIOPHYSICAL JOURNAL

Improved Model of Fluorescence Recovery Expands the Application of Multiphoton Fluorescence Recovery after Photobleaching in Vivo

(2009) Kelley D. Sullivan et al.   BIOPHYSICAL JOURNAL

Direct Measurement of Association and Dissociation Rates of DNA Binding in Live Cells by Fluorescence Correlation Spectroscopy

(2009) Ariel Michelman-Ribeiro et al.   BIOPHYSICAL JOURNAL

A Generalization of Theory for Two-Dimensional Fluorescence Recovery after Photobleaching Applicable to Confocal Laser Scanning Microscopes

(2009) Minchul Kang et al.   BIOPHYSICAL JOURNAL

Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin

(2009) Aurélien Bancaud et al.   EMBO JOURNAL

Stabilisation of acidified skimmed milk with HM pectin

(2009) Søren Jensen et al.   FOOD HYDROCOLLOIDS

Quantitative interpretation of binding reactions of rapidly diffusing species using fluorescence recovery after photobleaching

(2009) G.D. TSIBIDIS   JOURNAL OF MICROSCOPY

Expanding the scope of quantitative FRAP analysis

(2009) Mark A. Hallen et al.   JOURNAL OF THEORETICAL BIOLOGY

Small-Molecule Diffusion through Polycrystalline Triglyceride Networks Quantified Using Fluorescence Recovery after Photobleaching†

(2009) Stéphanie Marty et al.   LANGMUIR

Transcription Dynamics

(2009) Gordon L. Hager et al.   MOLECULAR CELL

Crowding Effects on Diffusion in Solutions and Cells

(2008) James A. Dix et al.   Annual Review of Biophysics

Macromolecular diffusion and release from self-assembled β-hairpin peptide hydrogels

(2008) Monica C. Branco et al.   BIOMATERIALS

A New FRAP/FRAPa Method for Three-Dimensional Diffusion Measurements Based on Multiphoton Excitation Microscopy

(2008) Davide Mazza et al.   BIOPHYSICAL JOURNAL

Fluorescence Recovery Kinetic Analysis of γ-Tubulin Binding to the Mitotic Spindle

(2008) Mark A. Hallen et al.   BIOPHYSICAL JOURNAL

Fluorescence Recovery after Photobleaching: The Case of Anomalous Diffusion

(2008) Ariel Lubelski et al.   BIOPHYSICAL JOURNAL

A Method Improving the Accuracy of Fluorescence Recovery after Photobleaching Analysis

(2008) Peter Jönsson et al.   BIOPHYSICAL JOURNAL

Evidence for a Common Mode of Transcription Factor Interaction with Chromatin as Revealed by Improved Quantitative Fluorescence Recovery after Photobleaching

(2008) Florian Mueller et al.   BIOPHYSICAL JOURNAL

Potential use of an estrogen–glucocorticoid receptor chimera as a drug screen for tissue selective estrogenic activity

(2008) Benit S. Maru et al.   BONE

Dynamics of the CapG actin-binding protein in the cell nucleus studied by FRAP and FCS

(2008) Malte Renz et al.   CHROMOSOME RESEARCH

Analysis of membrane-localized binding kinetics with FRAP

(2008) Omer Dushek et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

From macroscopic to molecular scale investigations of mass transfer of small molecules through edible packaging applied at interfaces of multiphase food products

(2008) Thomas Karbowiak et al.   Innovative Food Science & Emerging Technologies

Proposal of a Set of Model Polymer Additives Designed for Confocal FRAP Diffusion Experiments

(2008) Jérémy Pinte et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Ncd motor binding and transport in the spindle

(2008) M. A. Hallen et al.   JOURNAL OF CELL SCIENCE

Investigation of binding mechanisms of nuclear proteins using confocal scanning laser microscopy and FRAP

(2008) George D. Tsibidis et al.   JOURNAL OF THEORETICAL BIOLOGY

Self-Diffusion in Chitosan Networks: From a Gel−Gel Method to Fluorescence Recovery after Photobleaching by Fringe Pattern

(2008) Linda Payet et al.   MACROMOLECULES

Analysis of diffusion and binding in cells using the RICS approach

(2008) Michelle A. Digman et al.   MICROSCOPY RESEARCH AND TECHNIQUE