pGlycoQuant with a deep residual network for quantitative glycoproteomics at intact glycopeptide level

Glyco-Decipher enables glycan database-independent peptide matching and in-depth characterization of site-specific N-glycosylation

(2022) Zheng Fang et al.   Nature Communications

High-throughput site-specific N-glycoproteomics reveals glyco-signatures for liver disease diagnosis

(2022) Zhenyu Sun et al.   National Science Review

Glycoproteomics

(2021) Arunima Singh   NATURE METHODS

3D microscopy and deep learning reveal the heterogeneity of crown-like structure microenvironments in intact adipose tissue

(2021) Junlong Geng et al.   Science Advances

StrucGP: de novo structural sequencing of site-specific N-glycan on glycoproteins using a modularization strategy

(2021) Jiechen Shen et al.   NATURE METHODS

Tools to cut the sweet layer-cake that is glycoproteomics

(2021) Vivien Marx   NATURE METHODS

A deep learning system for detecting diabetic retinopathy across the disease spectrum

(2021) Ling Dai et al.   Nature Communications

Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3

(2021) Wen-Feng Zeng et al.   NATURE METHODS

Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis

(2021) Rebeca Kawahara et al.   NATURE METHODS

GproDIA enables data-independent acquisition glycoproteomics with comprehensive statistical control

(2021) Yi Yang et al.   Nature Communications

Deep residual learning for neuroimaging: An application to predict progression to Alzheimer’s disease

(2020) Anees Abrol et al.   JOURNAL OF NEUROSCIENCE METHODS

Recent advances in software tools for more generic and precise intact glycopeptide analysis

(2020) Weiqian Cao et al.   MOLECULAR & CELLULAR PROTEOMICS

Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping

(2020) Simon Höllerer et al.   Nature Communications

Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco

(2020) Daniel A. Polasky et al.   NATURE METHODS

Getting more for less: new software solutions for glycoproteomics

(2020) Jeremy L. Praissman et al.   NATURE METHODS

O-Pair Search with MetaMorpheus for O-glycopeptide characterization

(2020) Lei Lu et al.   NATURE METHODS

A streamlined pipeline for multiplexed quantitative site-specific N-glycoproteomics

(2020) Pan Fang et al.   Nature Communications

Glycoproteomics-based signatures for tumor subtyping and clinical outcome prediction of high-grade serous ovarian cancer

(2020) Jianbo Pan et al.   Nature Communications

Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis

(2019) Nicholas M. Riley et al.   Nature Communications

Glycosylation in health and disease

(2019) Colin Reily et al.   Nature Reviews Nephrology

Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses

(2018) L. Renee Ruhaak et al.   CHEMICAL REVIEWS

Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine

(2018) Hao Chi et al.   NATURE BIOTECHNOLOGY

Comparative glycoproteomics of stem cells identifies new players in ricin toxicity

(2017) Johannes Stadlmann et al.   NATURE

pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification

(2017) Ming-Qi Liu et al.   Nature Communications

Biological roles of glycans

(2016) Ajit Varki   GLYCOBIOLOGY

Maturing Glycoproteomics Technologies Provide Unique Structural Insights into theN-glycoproteome and Its Regulation in Health and Disease

(2016) Morten Thaysen-Andersen et al.   MOLECULAR & CELLULAR PROTEOMICS

Towards comprehensive and quantitative proteomics for diagnosis and therapy of human disease

(2016) Paolo Cifani et al.   PROTEOMICS

L1CAM in human cancer

(2015) Peter Altevogt et al.   INTERNATIONAL JOURNAL OF CANCER

Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides

(2015) Shisheng Sun et al.   NATURE BIOTECHNOLOGY

pQuant Improves Quantitation by Keeping out Interfering Signals and Evaluating the Accuracy of Calculated Ratios

(2014) Chao Liu et al.   ANALYTICAL CHEMISTRY

Serpins Promote Cancer Cell Survival and Vascular Co-Option in Brain Metastasis

(2014) Manuel Valiente et al.   CELL

L1CAM

(2012) Helena Kiefel et al.   Cell Adhesion & Migration

The development of retrosynthetic glycan libraries to profile and classify the human serum N-linked glycome

(2009) Scott R. Kronewitter et al.   PROTEOMICS

GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans†

(2008) Alessio Ceroni et al.   JOURNAL OF PROTEOME RESEARCH

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY