Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials

Hierarchical autoclassification of cryo-EM samples and macromolecular energy landscape determination

(2022) J. Gomez-Blanco et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy

(2022) C. O. S. Sorzano et al.   Acta Crystallographica Section D-Structural Biology

CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks

(2021) Ellen D. Zhong et al.   NATURE METHODS

Deep learning-based mixed-dimensional Gaussian mixture model for characterizing variability in cryo-EM

(2021) Muyuan Chen et al.   NATURE METHODS

Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials

(2021) David Herreros et al.   IUCrJ

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures

(2020) Roberto Melero et al.   IUCrJ

Hyper-molecules: on the representation and recovery of dynamical structures for applications in flexible macro-molecules in cryo-EM

(2019) Roy R Lederman et al.   INVERSE PROBLEMS

Structure of a pre-catalytic spliceosome

(2017) Clemens Plaschka et al.   NATURE

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

(2017) Ali Punjani et al.   NATURE METHODS

Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

(2017) J. Bernard Heymann   PROTEIN SCIENCE

A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy

(2017) C. O. S. Sorzano et al.   Biomed Research International

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy

(2016) J.M. de la Rosa-Trevín et al.   JOURNAL OF STRUCTURAL BIOLOGY

Cryo electron microscopy to determine the structure of macromolecular complexes

(2016) Marta Carroni et al.   METHODS

Continuous changes in structure mapped by manifold embedding of single-particle data in cryo-EM

(2016) Joachim Frank et al.   METHODS

Iterative Elastic 3D-to-2D Alignment Method Using Normal Modes for Studying Structural Dynamics of Large Macromolecular Complexes

(2014) Qiyu Jin et al.   STRUCTURE

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine

(2014) Wilson Wong et al.   eLife

Xmipp 3.0: An improved software suite for image processing in electron microscopy

(2013) J.M. de la Rosa-Trevín et al.   JOURNAL OF STRUCTURAL BIOLOGY