Genome‐wide association study reveals structural chromosome variations with phenotypic effects in wheat ( Triticum aestivum L.)

Wheat breeding history reveals synergistic selection of pleiotropic genomic sites for plant architecture and grain yield

(2022) Aili Li et al.   Molecular Plant

Analysis of Genetic Regions Related to Field Grain Number per Spike From Chinese Wheat Founder Parent Linfen 5064

(2022) Ling Qiao et al.   Frontiers in Plant Science

Genome-Wide Association Study of Grain Number in Common Wheat From Shanxi Under Different Water Regimes

(2022) Xingwei Zheng et al.   Frontiers in Plant Science

Identifying Balanced Chromosomal Translocations in Human Embryos by Oxford Nanopore Sequencing and Breakpoints Region Analysis

(2022) Zhenle Pei et al.   Frontiers in Genetics

Genetic Diversity Assessment of the International Maize and Wheat Improvement Center and Chinese Wheat Core Germplasms by Non-Denaturing Fluorescence In Situ Hybridization

(2022) Manyu Yang et al.   Plants-Basel

Dispersed emergence and protracted domestication of polyploid wheat uncovered by mosaic ancestral haploblock inference

(2022) Zihao Wang et al.   Nature Communications

The wheat Seven in Absentia gene is associated with increases in biomass and yield in hot climates

(2021) Pauline Thomelin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Plant Pan-Genomics Comes of Age

(2021) Li Lei et al.   Annual Review of Plant Biology

Predominant wheat-alien chromosome translocations in newly developed wheat of China

(2021) Nan Wu et al.   MOLECULAR BREEDING

Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations

(2021) Peng Qin et al.   CELL

Current status of structural variation studies in plants

(2021) Yuxuan Yuan et al.   PLANT BIOTECHNOLOGY JOURNAL

Enlisting wild grass genes to combat nitrification in wheat farming: A nature-based solution

(2021) Guntur V. Subbarao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale integration of meta-QTL and genome-wide association study discovers the genomic regions and candidate genes for yield and yield-related traits in bread wheat

(2021) Yang Yang et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide analysis of deletions in maize population reveals abundant genetic diversity and functional impact

(2021) Xiao Zhang et al.   THEORETICAL AND APPLIED GENETICS

Chromosome restructuring among hybridizing wild wheats

(2020) Christian Parisod et al.   NEW PHYTOLOGIST

Sympatric speciation of wild emmer wheat driven by ecology and chromosomal rearrangements

(2020) Hongwei Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic architecture underpinning yield component traits in wheat

(2020) Shuanghe Cao et al.   THEORETICAL AND APPLIED GENETICS

A structural variation reference for medical and population genetics

(2020) Ryan L. Collins et al.   NATURE

Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat

(2020) Hongwei Wang et al.   SCIENCE

Frequency, Origins, and Evolutionary Role of Chromosomal Inversions in Plants

(2020) Kaichi Huang et al.   Frontiers in Plant Science

Structural Variation of the X Chromosome Heterochromatin in the Anopheles gambiae Complex

(2020) Atashi Sharma et al.   Genes

Identification of Structural Variants in Two Novel Genomes of Maize Inbred Lines Possibly Related to Glyphosate Tolerance

(2020) Medhat Mahmoud et al.   Plants-Basel

Pan-Genome of Wild and Cultivated Soybeans

(2020) Yucheng Liu et al.   CELL

Evolutionary genomics of structural variation in Asian rice (Oryza sativa) domestication

(2020) Yixuan Kou et al.   MOLECULAR BIOLOGY AND EVOLUTION

The contribution of photosynthesis traits and plant height components to plant height in wheat at the individual quantitative trait locus level

(2020) Ma Yu et al.   Scientific Reports

A Collinearity-incorporating Homology Inference Strategy for Connecting Emerging Assemblies in Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era

(2020) Yongming Chen et al.   Molecular Plant

Resequencing of 145 Landmark Cultivars Reveals Asymmetric Sub-genome Selection and Strong Founder Genotype Effects on Wheat Breeding in China

(2020) Chenyang Hao et al.   Molecular Plant

Multiple wheat genomes reveal global variation in modern breeding

(2020) Sean Walkowiak et al.   NATURE

An efficient Oligo‐FISH painting system for revealing chromosome rearrangements and polyploidization in Triticeae

(2020) Guangrong Li et al.   PLANT JOURNAL

Gene regulatory effects of a large chromosomal inversion in highland maize

(2020) Taylor Crow et al.   PLoS Genetics

Extensive intraspecific gene order and gene structural variations in upland cotton cultivars

(2019) Zhaoen Yang et al.   Nature Communications

Cytological and molecular characterization of Thinopyrum bessarabicum chromosomes and structural rearrangements introgressed in wheat

(2019) Jianyong Chen et al.   MOLECULAR BREEDING

TaDA1 , a conserved negative regulator of kernel size, has an additive effect with TaGW2 in common wheat ( Triticum aestivum L.)

(2019) Hong Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Fine Physical Bin Mapping of the Powdery Mildew Resistance Gene Pm21 Based on Chromosomal Structural Variations in Wheat

(2018) Shanying Zhu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Structural chromosome rearrangements and polymorphisms identified in Chinese wheat cultivars by high-resolution multiplex oligonucleotide FISH

(2018) Xinyi Huang et al.   THEORETICAL AND APPLIED GENETICS

Identification and characterization of Rht25, a locus on chromosome arm 6AS affecting wheat plant height, heading time, and spike development

(2018) Youngjun Mo et al.   THEORETICAL AND APPLIED GENETICS

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes

(2018) Silong Sun et al.   NATURE GENETICS

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

Reassessment of the evolution of wheat chromosomes 4A, 5A, and 7B

(2018) Jan Dvorak et al.   THEORETICAL AND APPLIED GENETICS

Physical location of tandem repeats in the wheat genome and application for chromosome identification

(2018) Tao Lang et al.   PLANTA

Exploiting the ZIP4 homologue within the wheat Ph1 locus has identified two lines exhibiting homoeologous crossover in wheat-wild relative hybrids

(2017) María-Dolores Rey et al.   MOLECULAR BREEDING

Mapping of homoeologous chromosome exchanges influencing quantitative trait variation in Brassica napus

(2017) Anna Stein et al.   PLANT BIOTECHNOLOGY JOURNAL

A systematic review of rye (Secale cereale L.) as a source of resistance to pathogens and pests in wheat (Triticum aestivum L.)

(2017) Leonardo A. Crespo-Herrera et al.   HEREDITAS

Deletion of a Stay-Green Gene Associates with Adaptive Selection in Brassica napus

(2016) Lunwen Qian et al.   Molecular Plant

Molecular, genetic and evolutionary analysis of a paracentric inversion inArabidopsis thaliana

(2016) Paul Fransz et al.   PLANT JOURNAL

Copy number variation at the HvCBF4–HvCBF2 genomic segment is a major component of frost resistance in barley

(2016) Enrico Francia et al.   PLANT MOLECULAR BIOLOGY

Loss-of-Function Mutations in Three Homoeologous PHYTOCLOCK 1 Genes in Common Wheat Are Associated with the Extra-Early Flowering Phenotype

(2016) Nobuyuki Mizuno et al.   PLoS One

Multiply to conquer: Copy number variations at Ppd-B1 and Vrn-A1 facilitate global adaptation in wheat

(2015) Tobias Würschum et al.   BMC GENETICS

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber

(2015) Zhonghua Zhang et al.   PLANT CELL

QTL detection for wheat kernel size and quality and the responses of these traits to low nitrogen stress

(2015) Fa Cui et al.   THEORETICAL AND APPLIED GENETICS

Understanding genome structural variations

(2015) Alexej Abyzov et al.   Oncotarget

Aluminum tolerance in maize is associated with higher MATE1 gene copy number

(2013) L. G. Maron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

(2012) Zhou Fang et al.   GENETICS

Genome Evolution Due to Allopolyploidization in Wheat

(2012) M. Feldman et al.   GENETICS

Copy Number Variation Affecting the Photoperiod-B1 and Vernalization-A1 Genes Is Associated with Altered Flowering Time in Wheat (Triticum aestivum)

(2012) Aurora Díaz et al.   PLoS One

Human Copy Number Variation and Complex Genetic Disease

(2011) Santhosh Girirajan et al.   Annual Review of Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry

(2011) Mathieu Joron et al.   NATURE

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize

(2011) J. A. Poland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)

(2011) Lei-Ying Zheng et al.   GENOME BIOLOGY

Chromosomes and cancer cells

(2010) Sarah L. Thompson et al.   CHROMOSOME RESEARCH

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content

(2009) Nathan M. Springer et al.   PLoS Genetics

Genetic diversity and construction of core collection in Chinese wheat genetic resources

(2008) ChenYang Hao et al.   Science Bulletin