Article
Multidisciplinary Sciences
Alexander M. Gilchrist, Xin Wu, Bryson A. Hawkins, David E. Hibbs, Philip A. Gale
Summary: Synthetic anion transporters have potential in treating life-threatening diseases and fluorination has been shown to tune their properties. In this study, a series of fluorinated tetrapodal anion transporters were designed and their effects on lipophilicity, solubility, deliverability, and anion transport selectivity were investigated. The most fluorinated tetrathiourea displayed the highest transport activity and an interesting inversion of Cl- vs NO3- transport selectivity was observed.
Review
Chemistry, Multidisciplinary
David Drew, Rachel A. North, Kumar Nagarathinam, Mikio Tanabe
Summary: The major facilitator superfamily (MFS) is the largest known superfamily of secondary active transporters, responsible for transporting a wide range of substrates with remarkable diversity and complex gating mechanisms. Studies have shown that residues far from the substrate binding site in MFS transporters can be just as important, and some have evolved to form unique complexes. Through in-depth descriptions of glucose transporters and multidrug resistance antiporters, novel refinements to the rocker-switch alternating-access model have been proposed.
Article
Chemistry, Organic
Sribash Das, Rama Karn, Mohit Kumar, Soumya Srimayee, Debasis Manna
Summary: A molecular switch has been developed that can recognize and transport Cl- across lipid bilayers. The conformational changes induced by Cl- were confirmed through XRD-crystal structure and NOESY NMR spectra studies. The transportation of H+/Cl- across membranes was achieved through cooperative interactions between the quinazoline moiety and the thiourea moiety. The potent compound also exhibited increased Cl- transport in acidic environments and showed antibacterial activities by transporting H+/Cl- across Gram-positive bacteria.
ORGANIC & BIOMOLECULAR CHEMISTRY
(2023)
Article
Multidisciplinary Sciences
Erika A. Riederer, Pierre Moenne-Loccoz, Francis Valiyaveetil
Summary: This study investigates the binding process of Na+ ions to the Na1 and Na3 sites in glutamate transporters and their roles in protein conformational changes. The results show that Na+ binding to the Na3 site is crucial for triggering the structural switch, while Na+ binding to the Na1 site partially opens the gate. Complete gate opening requires Na+ binding to both Na1 and Na3 sites. Additionally, an alternative pathway for the coupled binding of Na+ and aspartate is proposed.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Article
Chemistry, Organic
Krystyna Maslowska-Jarzyna, Alessio Cataldo, Anna Marszalik, Ilona Ignatikova, Stephen J. Butler, Radoslaw Stachowiak, Michal J. Chmielewski, Hennie Valkenier
Summary: This study investigated the transport of bicarbonate and chloride ions by carbazoles with two amido/thioamido groups using a bicarbonate-sensitive probe. The researchers found a significant concentration dependence of the transporters. Based on insights into anion transport mechanisms, the compounds were tested for antimicrobial activity and showed a strong correlation with their ion transport properties.
ORGANIC & BIOMOLECULAR CHEMISTRY
(2022)
Article
Biology
Gianluca Trinco, Valentina Arkhipova, Alisa A. Garaeva, Cedric A. J. Hutter, Markus A. Seeger, Albert Guskov, Dirk J. Slotboom
Summary: Trinco et al. measured aspartate uptake rates in proteoliposomes containing purified prokaryotic Na+-coupled aspartate transporter GltTk. To overcome limitation of protein orientation, they use synthetic nanobody that blocks transporters from outside and reveal mechanistic features of Na+-aspartate symport that cannot be observed in detergent solution.
COMMUNICATIONS BIOLOGY
(2021)
Article
Multidisciplinary Sciences
Marinus Toman, John Joseph Wade, Alexei Verkhratsky, Mark Dallas, Angela Bithell, Bronac Flanagan, Jim Harkin, Liam McDaid
Summary: In this study, a computational model is used to investigate the impact of the spatial relationship between astrocytes and synapses on ionic homeostasis. The results show that the degree of astrocyte coverage affects the concentrations of K+, Na+, and Ca2+, particularly the uptake of Ca2+. Moreover, the proximity of astrocytic leaflets to the synaptic cleft determines the formation of Ca2+ microdomains, which may affect leaflet motility.
SCIENTIFIC REPORTS
(2023)
Article
Neurosciences
Leonid P. Savtchenko, Kaiyu Zheng, Dmitri A. Rusakov
Summary: Research has shown that high-affinity glutamate transporters can efficiently constrain extrasynaptic spread of glutamate, even when diffusion passages are relatively open, highlighting the importance of perisynaptic environment in preventing glutamate escape.
FRONTIERS IN CELLULAR NEUROSCIENCE
(2021)
Review
Neurosciences
Xiang Li, Wenjun Wang, Jianghong Yan, Fancai Zeng
Summary: This review discusses the role of glutamate transporters in Parkinson's disease, comparing the expression of different types of glutamate transporter genes using bioinformatics and suggesting that they may be potential targets for the treatment of PD.
FRONTIERS IN NEUROSCIENCE
(2021)
Review
Medicine, Research & Experimental
Diogo Neves, Ivan L. Salazar, Ramiro D. Almeida, Raquel M. Silva
Summary: Excitotoxicity is the neuronal damage caused by excessive release of glutamate and subsequent activation of excitatory plasma membrane receptors. This phenomenon is mainly driven by excessive activation of glutamate receptors. Excitotoxicity is common in chronic disorders of the CNS and is considered the primary mechanism of neuronal loss of function and cell death in acute CNS diseases.
Review
Neurosciences
Jinyue Liu, Shilin Jia, Fang Huang, Hongwen He, Wenguo Fan
Summary: This study reviewed the mechanisms of peripheral glutamate-mediated orofacial pain, the regulation of glutamate in the periphery, and the translation of these findings into pain treatments.
FRONTIERS IN NEUROSCIENCE
(2022)
Article
Multidisciplinary Sciences
Bo Xu, Yu Long, Xueying Feng, Xujun Zhu, Na Sai, Larissa Chirkova, Annette Betts, Johannes Herrmann, Everard J. Edwards, Mamoru Okamoto, Rainer Hedrich, Matthew Gilliham
Summary: The study shows that GABA production in guard cells of Arabidopsis reduces stomatal opening and transpirational water loss, thereby enhancing water use efficiency. This highlights a novel role for GABA metabolism in fine tuning plant physiology and offers new possibilities for enhancing plant stress resilience.
NATURE COMMUNICATIONS
(2021)
Article
Chemistry, Multidisciplinary
Zhong-Kun Wang, Xiao-Qiao Hong, Jinhui Hu, Yuan-Yuan Xing, Wen-Hua Chen
Summary: A series of squaramido-tethered bisbenzimidazoles were synthesized and showed moderate binding affinity toward chloride anions, being more active at acidic pH. Some of these conjugates exhibited moderate cytotoxicity towards selected solid tumor cell lines, possibly in an apoptotic manner, as indicated by MTT assay results.
Review
Neurosciences
Cheng Zhao, Chunyu Wang, Hainan Zhang, Weiqian Yan
Summary: Parkinson's disease (PD) is a common neurodegenerative disease associated with multiple neurotransmitter pathways. Glutamate, the central excitatory neurotransmitter, plays a critical role in neuronal activity control. This review highlights the role of vesicular glutamate transporters (VGLUTs) in neurotransmitter and synaptic communication, as well as the significant alterations in Glutamate transmission and VGLUTs levels in PD.
FRONTIERS IN MOLECULAR NEUROSCIENCE
(2023)
Article
Plant Sciences
Georgios Sofianos, Anastasios Samaras, Georgios Karaoglanidis
Summary: Botrytis cinerea is a high-risk pathogen for fungicide resistance development. The study found that MLR/MDR strains are present in Greek populations of strawberries, rootstocks, and tomatoes, with notably high frequencies of resistance. The combination of MLR and MDR mutations leads to even higher levels of fungicide resistance.
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Neurosciences
Stefan A. Berghoff, Lena Spieth, Ting Sun, Leon Hosang, Lennart Schlaphoff, Constanze Depp, Tim Duking, Jan Winchenbach, Jonathan Neuber, David Ewers, Patricia Scholz, Franziska van der Meer, Ludovico Cantuti-Castelvetri, Andrew O. Sasmita, Martin Meschkat, Torben Ruhwedel, Wiebke Mobius, Roman Sankowski, Marco Prinz, Inge Huitinga, Michael W. Sereda, Francesca Odoardi, Till Ischebeck, Mikael Simons, Christine Stadelmann-Nessler, Julia M. Edgar, Klaus-Armin Nave, Gesine Saher
Summary: The study reveals that sterol synthesis in microglia/macrophages is crucial for resolving inflammation and inducing remyelination in the repair of demyelinated lesions in multiple sclerosis (MS), with desmosterol activating LXR signaling as a key mechanism.
NATURE NEUROSCIENCE
(2021)
Article
Biochemistry & Molecular Biology
Annika Bartsch, Callum M. Ives, Christof Kattner, Florian Pein, Manuel Diehn, Mikio Tanabe, Axel Munk, Ulrich Zachariae, Claudia Steinem, Salome Llabres
Summary: This study highlights the importance of a single point mutation in the porin PorB from Neisseria meningitidis in affecting the binding and permeation of beta-lactam antibiotics, shedding light on the molecular basis of drug resistance in Gram-negative bacteria. Through various techniques including X-ray crystallography, electrophysiology, biomolecular simulation, and liposome swelling experiments, differences in drug interaction with PorB were identified, providing insights into potential broader applications in drug-porin interactions. This research improves the understanding of how mutations in porins contribute to drug resistance mechanisms.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2021)
Article
Biochemistry & Molecular Biology
Claudia Alleva, Jan-Philipp Machtens, Daniel Kortzak, Ingo Weyand, Christoph Fahlke
Summary: Glutamate is the major excitatory neurotransmitter in the mammalian central nervous system, and its transport is facilitated by the excitatory amino acid transporters (EAATs). These transporters utilize a complex stoichiometry to accumulate glutamate against concentration gradients and are also selective channels that open and close during the transport cycle. Recent research has uncovered the molecular mechanisms of coupled transport, substrate selectivity, and anion conduction in EAAT glutamate transporters, emphasizing the hairpin 2 gate as a key component in these functions.
NEUROCHEMICAL RESEARCH
(2022)
Article
Clinical Neurology
Hailan He, Raul E. Guzman, Dezhi Cao, Juan Sierra-Marquez, Fei Yin, Christoph Fahlke, Jing Peng, Tobias Stauber
Summary: This study expanded the phenotypic and genetic spectrum of CLCN4-related epilepsy, showing that most patients have drug-resistant seizures starting in infancy, with cognitive and language impairment. Genotype-phenotype correlations were complex, with missense variants leading to more severe phenotypes.
Article
Chemistry, Physical
Maria Gabriella Chiariello, Mercedes Alfonso-Prieto, Emiliano Ippoliti, Christoph Fahlke, Paolo Carloni
Summary: The research demonstrates how glutamate E318 in CLCF-eca binds to F-, facilitating the release of H+ as HF to the cytosol and achieving a net 1:1 F-/H+ stoichiometry.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2021)
Article
Multidisciplinary Sciences
Andrei Y. Kostritskii, Jan-Philipp Machtens
Summary: The study identified that the main ion-conductive state of TMEM16 lipid scramblases is modulated by lipid headgroups, and different scramblase isoforms regulate ion selectivity through their amino-acid composition.
NATURE COMMUNICATIONS
(2021)
Article
Clinical Neurology
Peter Kovermann, Yulia Kolobkova, Arne Franzen, Christoph Fahlke
Summary: Mutations in the gene SLC1A2 encoding the excitatory amino acid transporter 2 (EAAT2) are associated with severe forms of epileptic encephalopathy. Mutations G82R and L85P contribute to the formation of an anion pore in EAAT2, allowing glutamate efflux, while mutation P289R decreases glutamate uptake but increases anion currents, leading to glutamate excitotoxicity and neuronal hyperexcitability in affected patients. Therapeutic agents targeting the EAAT anion channel function could be beneficial in the future.
Article
Chemistry, Medicinal
Dominik Gurvic, Andrew G. Leach, Ulrich Zachariae
Summary: This study employs a data-driven approach to uncover the chemical features that influence the bioactivity of Gram-negative bacteria. The researchers discovered recurring chemical moieties that consistently improve activity, suggesting their potential use in optimizing compounds for increased Gram-negative uptake. These findings may expand the chemical space of broad-spectrum antibiotics and aid in the search for new antibiotic compound classes.
JOURNAL OF MEDICINAL CHEMISTRY
(2022)
Article
Biophysics
Andrei Y. Kostritskii, Jan -Philipp Machtens
Summary: The ability to sense transmembrane voltage and understand the molecular basis of voltage coupling in voltage-gated sodium channels is crucial for understanding their physiological roles. This study provides new insights into the voltage-sensing mechanisms of Nav channels through high-resolution quantification of VSD electrostatics, revealing the importance of electric-field reshaping for voltage sensing.
BIOPHYSICAL JOURNAL
(2023)
Article
Biophysics
Abhishek Acharya, Kalyanashis Jana, Dominik Gurvic, Ulrich Zachariae, Ulrich Kleinekathofer
Summary: Predicting molecular permeability and evaluating the effect of molecular transformations on permeation rates are critical for the development of effective antibiotics. In this study, a computational approach using Brownian dynamics is proposed to obtain estimates of molecular permeability through a porin channel within hours. The method is significantly faster compared with previous approaches and shows good correlation with experimental results. The potential applications of this method in high-throughput screening for fast permeators are discussed.
BIOPHYSICAL JOURNAL
(2023)
Article
Physiology
Callum M. M. Ives, Neil J. J. Thomson, Ulrich Zachariae
Summary: Selective ion exchange across cellular membranes is important for cellular processes, especially Ca2+-mediated signaling. Maintaining strict Ca2+ concentration gradients across membranes is necessary due to the cytotoxic nature of elevated intracellular Ca2+ levels. The TRPV ion channels, particularly TRPV5 and TRPV6, play a crucial role in Ca2+ signaling by allowing selective permeation of Ca2+ ions. This study uses molecular dynamics simulations to investigate the mechanisms behind the high Ca2+ selectivity of some TRPV channels compared to others.
JOURNAL OF GENERAL PHYSIOLOGY
(2023)
Article
Multidisciplinary Sciences
Bettina Kolen, Bart Borghans, Daniel Kortzak, Victor Lugo, Cora Hannack, Raul E. Guzman, Ghanim Ullah, Christoph Fahlke
Summary: In glutamatergic neurons, vesicular glutamate transporters act as H+/anion exchangers for selective glutamate accumulation in synaptic vesicles. This study reveals that VGLUT1 functions as H+-glutamate exchanger with variable transport coupling and as a Cl- efflux pathway through an aqueous anion channel. Mathematical modeling demonstrates that H+ coupling enables selective glutamate accumulation, while VGLUT1's Cl- channel function increases transport efficiency.
NATURE COMMUNICATIONS
(2023)
Meeting Abstract
Clinical Neurology
Daniela Stausberg, David Ewers, Friederike Arlt, Klaus-Armin Nave, Michael Sereda
JOURNAL OF THE PERIPHERAL NERVOUS SYSTEM
(2022)
Meeting Abstract
Clinical Neurology
Doris Krauter, David Ewers, Timon J. Hartmannn, Theresa Kungl, Robert Fledrich, Sandra Goebbels, Klaus-Armin Nave, Michael W. Sereda
JOURNAL OF THE PERIPHERAL NERVOUS SYSTEM
(2021)