AI for Life: Trends in Artificial Intelligence for Biotechnology

How data science and AI-based technologies impact genomics

(2023) KeeYuan Ngiam et al.   SINGAPORE MEDICAL JOURNAL

Deep ROC Analysis and AUC as Balanced Average Accuracy, for Improved Classifier Selection, Audit and Explanation

(2022) Andre M. Carrington et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Digital Transformation in Smart Farm and Forest Operations Needs Human-Centered AI: Challenges and Future Directions

(2022) Andreas Holzinger et al.   SENSORS

Machine Learning for Plant Stress Modeling: A Perspective towards Hormesis Management

(2022) Amanda Kim Rico-Chávez et al.   Plants-Basel

Lightweight Distributed Provenance Model for Complex Real–world Environments

(2022) Rudolf Wittner et al.   Scientific Data

Artificial intelligence in pharmacology research and practice

(2022) Maaike van der Lee et al.   CTS-Clinical and Translational Science

Explainability and causability for artificial intelligence-supported medical image analysis in the context of the European In Vitro Diagnostic Regulation

(2022) Heimo Müller et al.   New Biotechnology

AI-Assisted QT Measurements for Highly Automated Drug Safety Studies

(2022) Mously Dior Diaw et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Pathways linking biodiversity to human health: A conceptual framework

(2021) Melissa R. Marselle et al.   ENVIRONMENT INTERNATIONAL

High-throughput proteomics and AI for cancer biomarker discovery

(2021) Qi Xiao et al.   ADVANCED DRUG DELIVERY REVIEWS

Using machine learning approaches for multi-omics data analysis: A review

(2021) Parminder S. Reel et al.   BIOTECHNOLOGY ADVANCES

Laboratory-Developed Tests: Design of a Regulatory Strategy in Compliance with the International State-of-the-Art and the Regulation (EU) 2017/746 (EU IVDR [In Vitro Diagnostic Medical Device Regulation])

(2021) Folker Spitzenberger et al.   Therapeutic Innovation & Regulatory Science

Toward Human–AI Interfaces to Support Explainability and Causability in Medical AI

(2021) Andreas Holzinger et al.   COMPUTER

Estimating timber volume loss due to storm damage in Carinthia, Austria, using ALS/TLS and spatial regression models

(2021) Arne Nothdurft et al.   FOREST ECOLOGY AND MANAGEMENT

Predicting measures of soil health using the microbiome and supervised machine learning

(2021) Roland C. Wilhelm et al.   SOIL BIOLOGY & BIOCHEMISTRY

Precision Psychiatry Applications with Pharmacogenomics: Artificial Intelligence and Machine Learning Approaches

(2020) Eugene Lin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Machine Learning Algorithm for Predicting Warfarin Dose in Caribbean Hispanics Using Pharmacogenetic Data

(2020) Abiel Roche-Lima et al.   Frontiers in Pharmacology

The Nagoya Protocol and Its Implications on the EU Atlantic Area Countries

(2020) Joana Martins et al.   Journal of Marine Science and Engineering

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

The pandemic's first major research scandal erupts

(2020) Kelly Servick et al.   SCIENCE

Application of artificial intelligence models and optimization algorithms in plant cell and tissue culture

(2020) Mohsen Hesami et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Artificially intelligent soil quality and health indices for ‘next generation’ food production systems.

(2020) Vinícius Henrique Gomes Zuppa de Andrade et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Molecular representations in AI-driven drug discovery: a review and practical guide

(2020) Laurianne David et al.   Journal of Cheminformatics

Hormesis in plants: Physiological and biochemical responses

(2020) Arshad Jalal et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

The potential of remote sensing and artificial intelligence as tools to improve the resilience of agriculture production systems

(2020) Jinha Jung et al.   CURRENT OPINION IN BIOTECHNOLOGY

Biotechnology, Big Data and Artificial Intelligence

(2019) Arlindo L. Oliveira   Biotechnology Journal

Fungicide application increased copper-bioavailability and impaired nitrogen fixation through reduced root nodule formation on alfalfa

(2019) Martin Schneider et al.   ECOTOXICOLOGY

Why imaging data alone is not enough: AI-based integration of imaging, omics, and clinical data

(2019) Andreas Holzinger et al.   EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING

Does Soil Contribute to the Human Gut Microbiome?

(2019) Winfried E.H. Blum et al.   Microorganisms

Afforestation for climate change mitigation: Potentials, risks and trade‐offs

(2019) Jonathan C. Doelman et al.   GLOBAL CHANGE BIOLOGY

Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health

(2018) Petr Holub et al.   BIOPRESERVATION AND BIOBANKING

Ultra-Strong Machine Learning: comprehensibility of programs learned with ILP

(2018) Stephen H. Muggleton et al.   MACHINE LEARNING

Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health

(2018) Petr Holub et al.   Biopreservation and Biobanking

High-Throughput Plant Phenotyping for Developing Novel Biostimulants: From Lab to Field or From Field to Lab?

(2018) Youssef Rouphael et al.   Frontiers in Plant Science

The wild side of plant microbiomes

(2018) Juan E. Pérez-Jaramillo et al.   Microbiome

Comparison between soft computing methods for tomato quality grading using machine vision

(2018) Mohammad Saber Iraji   Journal of Food Measurement and Characterization

AI Paradigms for Teaching Biotechnology

(2018) Wilson Wen Bin Goh et al.   TRENDS IN BIOTECHNOLOGY

Beyond greenness: Detecting temporal changes in photosynthetic capacity with hyperspectral reflectance data

(2017) Mallory L. Barnes et al.   PLoS One

In-field automatic observation of wheat heading stage using computer vision

(2016) Yanjun Zhu et al.   BIOSYSTEMS ENGINEERING

Taking the Human Out of the Loop: A Review of Bayesian Optimization

(2016) Bobak Shahriari et al.   PROCEEDINGS OF THE IEEE

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

The Increasing Urgency for Standards in Basic Biologic Research

(2014) L. P. Freedman et al.   CANCER RESEARCH

Increasing value and reducing waste in research design, conduct, and analysis

(2014) John P A Ioannidis et al.   LANCET

Time to do something about reproducibility

(2014) Sean J Morrison   eLife

Future Scenarios for Plant Phenotyping

(2013) Fabio Fiorani et al.   Annual Review of Plant Biology

Representation Learning: A Review and New Perspectives

(2013) Y. Bengio et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Big Data in Life Cycle Assessment

(2013) Joyce Cooper et al.   JOURNAL OF INDUSTRIAL ECOLOGY

A Survey on Data Reproducibility in Cancer Research Provides Insights into Our Limited Ability to Translate Findings from the Laboratory to the Clinic

(2013) Aaron Mobley et al.   PLoS One

A call for transparent reporting to optimize the predictive value of preclinical research

(2012) Story C. Landis et al.   NATURE

Raise standards for preclinical cancer research

(2012) C. Glenn Begley et al.   NATURE

Believe it or not: how much can we rely on published data on potential drug targets?

(2011) Florian Prinz et al.   NATURE REVIEWS DRUG DISCOVERY

Molecular breeding in developing countries: challenges and perspectives

(2010) J-M Ribaut et al.   CURRENT OPINION IN PLANT BIOLOGY

Livestock production: recent trends, future prospects

(2010) P. K. Thornton   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Breeding Technologies to Increase Crop Production in a Changing World

(2010) M. Tester et al.   SCIENCE

Comparing environmental impacts for livestock products: A review of life cycle assessments

(2009) M. de Vries et al.   Livestock Science

Avoiding Another AI Winter

(2008) James Hendler   IEEE INTELLIGENT SYSTEMS