New TNT routines for parallel computing with MPI

Phylogenomics of braconid wasps (Hymenoptera, Braconidae) sheds light on classification and the evolution of parasitoid life history traits

(2022) Jovana M. Jasso-Martínez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Assessing topological congruence among concatenation-based phylogenomic approaches in empirical datasets

(2021) Ambrosio Torres et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens

(2021) Will Fischer et al.   Cell Host & Microbe

Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)

(2021) Ambrosio Torres et al.   CLADISTICS

A phylogenetic C interpreter for TNT

(2020) Pablo A Goloboff et al.   BIOINFORMATICS

Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets

(2019) Martin R. Smith   Biology Letters

Restructuring higher taxonomy using broad-scale phylogenomics: The living Ophiuroidea

(2017) Timothy D. O'Hara et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genomic evidence reveals a radiation of placental mammals uninterrupted by the KPg boundary

(2017) Liang Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data

(2017) Mark N. Puttick et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylotranscriptomic consolidation of the jawed vertebrate timetree

(2017) Iker Irisarri et al.   Nature Ecology & Evolution

The spider tree of life: phylogeny of Araneae based on target-gene analyses from an extensive taxon sampling

(2016) Ward C. Wheeler et al.   CLADISTICS

TNT version 1.5, including a full implementation of phylogenetic morphometrics

(2016) Pablo A. Goloboff et al.   CLADISTICS

Comparison of heuristic approaches to the generalized tree alignment problem

(2015) Eric Ford et al.   CLADISTICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

GB-to-TNT: facilitating creation of matrices from GenBank and diagnosis of results in TNT

(2012) Pablo A. Goloboff et al.   CLADISTICS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS