A global perspective on bacterial diversity in the terrestrial deep subsurface

Intramolecular isotopic evidence for bacterial oxidation of propane in subsurface natural gas reservoirs

(2019) Alexis Gilbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteria and archaea on Earth and their abundance in biofilms

(2019) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Deep-Subsurface Pressure Stimulates Metabolic Plasticity in Shale-Colonizing Halanaerobium spp.

(2019) Anne E. Booker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

‘Follow the Water’: Hydrogeochemical Constraints on Microbial Investigations 2.4 km Below Surface at the Kidd Creek Deep Fluid and Deep Life Observatory

(2019) Garnet S. Lollar et al.   GEOMICROBIOLOGY JOURNAL

The deep history of Earth's biomass

(2018) Sean McMahon et al.   JOURNAL OF THE GEOLOGICAL SOCIETY

Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias

(2018) Søren M Karst et al.   NATURE BIOTECHNOLOGY

The biomass distribution on Earth

(2018) Yinon M. Bar-On et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways

(2018) Diana Z. Sousa et al.   Nature Communications

Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life

(2018) Cody S. Sheik et al.   Frontiers in Microbiology

The biomass and biodiversity of the continental subsurface

(2018) C. Magnabosco et al.   Nature Geoscience

Phylogenetically Novel Uncultured Microbial Cells Dominate Earth Microbiomes

(2018) Karen G. Lloyd et al.   mSystems

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations

(2018) Raphael Eisenhofer et al.   TRENDS IN MICROBIOLOGY

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments

(2017) Alex W Hernsdorf et al.   ISME Journal

Reactivation of Deep Subsurface Microbial Community in Response to Methane or Methanol Amendment

(2017) Pauliina Rajala et al.   Frontiers in Microbiology

The Role of Microbial Electron Transfer in the Coevolution of the Biosphere and Geosphere

(2016) Benjamin I. Jelen et al.   Annual Review of Microbiology

Benzene Degradation by a Variovorax Species within a Coal Tar-Contaminated Groundwater Microbial Community

(2016) Kevin M. Posman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Hydrogeochemistry and coal-associated bacterial populations from a methanogenic coal bed

(2016) Elliott P. Barnhart et al.   INTERNATIONAL JOURNAL OF COAL GEOLOGY

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield

(2016) Valerie Hubalek et al.   ISME Journal

Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes

(2016) Philip E. Long et al.   TRENDS IN MICROBIOLOGY

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock

(2016) Alexandre Bagnoud et al.   Nature Communications

Sulfur mass-independent fractionation in subsurface fracture waters indicates a long-standing sulfur cycle in Precambrian rocks

(2016) L. Li et al.   Nature Communications

Anaerobic decomposition of humic substances by Clostridium from the deep subsurface

(2016) Akio Ueno et al.   Scientific Reports

Stable and Variable Parts of Microbial Community in Siberian Deep Subsurface Thermal Aquifer System Revealed in a Long-Term Monitoring Study

(2016) Yulia A. Frank et al.   Frontiers in Microbiology

Species–function relationships shape ecological properties of the human gut microbiome

(2016) Sara Vieira-Silva et al.   Nature Microbiology

Patterns of Endemism and Habitat Selection in Coalbed Microbial Communities

(2015) Christopher E. Lawson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla

(2015) Joanne B. Emerson et al.   ENVIRONMENTAL MICROBIOLOGY

Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages

(2015) Laura A. Hug et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolic reconfigurations aimed at the detoxification of a multi-metal stress in Pseudomonas fluorescens : Implications for the bioremediation of metal pollutants

(2015) Azhar Alhasawi et al.   JOURNAL OF BIOTECHNOLOGY

Active Microbial Communities Inhabit Sulphate-Methane Interphase in Deep Bedrock Fracture Fluids in Olkiluoto, Finland

(2015) Malin Bomberg et al.   Biomed Research International

Microbial methane formation in deep aquifers of a coal-bearing sedimentary basin, Germany

(2015) Friederike Gründger et al.   Frontiers in Microbiology

Microbiome composition and geochemical characteristics of deep subsurface high-pressure environment, Pyhäsalmi mine Finland

(2015) Hanna Miettinen et al.   Frontiers in Microbiology

Temperature and pressure adaptation of a sulfate reducer from the deep subsurface

(2015) Katja Fichtel et al.   Frontiers in Microbiology

Genome sequence analysis of Pseudomonas extremaustralis provides new insights into environmental adaptability and extreme conditions resistance

(2014) Laura J. Raiger Iustman et al.   EXTREMOPHILES

Don't let microbial samples perish

(2014) Noah Fierer et al.   NATURE

Deciphering the Prokaryotic Community and Metabolisms in South African Deep-Mine Biofilms through Antibody Microarrays and Graph Theory

(2014) Yolanda Blanco et al.   PLoS One

Chemolithotrophy in the continental deep subsurface: Sanford Underground Research Facility (SURF), USA

(2014) Magdalena R. Osburn et al.   Frontiers in Microbiology

Trends and future challenges in sampling the deep terrestrial biosphere

(2014) Michael J. Wilkins et al.   Frontiers in Microbiology

Bacterial Communities Associated with Subsurface Geochemical Processes in Continental Serpentinite Springs

(2013) William J. Brazelton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir

(2013) Yiran Dong et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence and characteristics of a diverse and metabolically active microbial community in deep subsurface clay borehole water

(2013) Katinka Wouters et al.   FEMS MICROBIOLOGY ECOLOGY

Influence of bedrock mineral composition on microbial diversity in a subglacial environment

(2013) Andrew C. Mitchell et al.   GEOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Desulfotomaculum spp. and related gram-positive sulfate-reducing bacteria in deep subsurface environments

(2013) Thomas Aüllo et al.   Frontiers in Microbiology

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

(2012) C. Lepleux et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact Disruption and Recovery of the Deep Subsurface Biosphere

(2012) Charles S. Cockell et al.   ASTROBIOLOGY

Sensitive life detection strategies for low-biomass environments: optimizing extraction of nucleic acids adsorbing to terrestrial and Mars analogue minerals

(2012) Susana O.L. Direito et al.   FEMS MICROBIOLOGY ECOLOGY

Control of different pyrite forms on desulfurization of coal with bacteria

(2012) P.K. Singh et al.   FUEL

Trace Elements Affect Methanogenic Activity and Diversity in Enrichments from Subsurface Coal Bed Produced Water

(2012) Burcu Ünal et al.   Frontiers in Microbiology

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

(2011) Joel E. Kostka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Capture of Planktonic Microbial Diversity in Fractures by Long-Term Monitoring of Flowing Boreholes, Evander Basin, South Africa

(2011) Mark M. Davidson et al.   GEOMICROBIOLOGY JOURNAL

Pattern of Elemental Release During the Granite Dissolution Can Be Changed by Aerobic Heterotrophic Bacterial Strains Isolated from Damma Glacier (Central Alps) Deglaciated Granite Sand

(2011) Aleš Lapanje et al.   MICROBIAL ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The genome ofPolaromonas naphthalenivoransstrain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer

(2009) Jane M. Yagi et al.   ENVIRONMENTAL MICROBIOLOGY

Mineral weathering by bacteria: ecology, actors and mechanisms

(2009) Stéphane Uroz et al.   TRENDS IN MICROBIOLOGY

Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth

(2008) D. Chivian et al.   SCIENCE

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE