Integrative metagenomic and metabolomic analyses reveal the role of gut microbiota in antibody-mediated renal allograft rejection

Gut microbiota alterations associated with antibody-mediated rejection after kidney transplantation

(2021) Junpeng Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bifidobacterium pseudocatenulatum Ameliorates DSS-Induced Colitis by Maintaining Intestinal Mechanical Barrier, Blocking Proinflammatory Cytokines, Inhibiting TLR4/NF-κB Signaling, and Altering Gut Microbiota

(2021) Yang Chen et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Urinary Excretion of N1-methyl-2-pyridone-5-carboxamide and N1-methylnicotinamide in Renal Transplant Recipients and Donors

(2020) Carolien P. J. Deen et al.   Journal of Clinical Medicine

The Banff 2019 Kidney Meeting Report (I): Updates on and clarification of criteria for T cell– and antibody‐mediated rejection

(2020) Alexandre Loupy et al.   AMERICAN JOURNAL OF TRANSPLANTATION

Bronchoalveolar bile acid and inflammatory markers to identify high-risk lung transplant recipients with reflux and microaspiration

(2020) Chen Yang Kevin Zhang et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

Dietary Supplementation of Probiotic Lactobacillus acidophilus Modulates Cholesterol Levels, Immune Response, and Productive Performance of Laying Hens

(2020) Abdulaziz A. Alaqil et al.   Animals

Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species

(2019) Marko Verce et al.   Frontiers in Microbiology

Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer

(2019) Shinichi Yachida et al.   NATURE MEDICINE

Synthesis and Evaluation of Hydrogen Peroxide Sensitive Prodrugs of Methotrexate and Aminopterin for the Treatment of Rheumatoid Arthritis

(2018) Jorge Peiró Cadahía et al.   JOURNAL OF MEDICINAL CHEMISTRY

Disruption of the Gut Microbiota With Antibiotics Exacerbates Acute Vascular Rejection

(2018) Kevin Rey et al.   TRANSPLANTATION

Gut microbiota and its implications in small bowel transplantation

(2018) Chenyang Wang et al.   Frontiers of Medicine

Gut microbes contribute to variation in solid organ transplant outcomes in mice

(2018) Christine M. McIntosh et al.   Microbiome

Antibody-Mediated Rejection of Solid-Organ Allografts

(2018) Alexandre Loupy et al.   NEW ENGLAND JOURNAL OF MEDICINE

A systemic workflow for profiling metabolome and lipidome in tissue

(2018) Dasheng Lu et al.   JOURNAL OF CHROMATOGRAPHY A

A Randomized Trial of Bortezomib in Late Antibody-Mediated Kidney Transplant Rejection

(2017) Farsad Eskandary et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Systems biology guided by XCMS Online metabolomics

(2017) Tao Huan et al.   NATURE METHODS

Acute antibody-mediated rejection in kidney transplant recipients

(2017) Scott Davis et al.   Transplantation Reviews

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

OPTN/SRTR 2013 Annual Data Report: Kidney

(2015) A. J. Matas et al.   AMERICAN JOURNAL OF TRANSPLANTATION

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

PLS/OPLS models in metabolomics: the impact of permutation of dataset rows on the K-fold cross-validation quality parameters

(2015) Mohamed N. Triba et al.   Molecular BioSystems

VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on

(2015) Lihong Chen et al.   NUCLEIC ACIDS RESEARCH

Serum Metabolomics Study of the Acute Graft Rejection in Human Renal Transplantation Based on Liquid Chromatography–Mass Spectrometry

(2014) Xinjie Zhao et al.   JOURNAL OF PROTEOME RESEARCH

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Antibody-Mediated Rejection in Kidney Transplantation: A Review of Pathophysiology, Diagnosis, and Treatment Options

(2014) Miae Kim et al.   PHARMACOTHERAPY

Assessment of Microbiome Variation During the Perioperative Period in Liver Transplant Patients: a Retrospective Analysis

(2013) Haifeng Lu et al.   MICROBIAL ECOLOGY

Complement-Binding Anti-HLA Antibodies and Kidney-Allograft Survival

(2013) Alexandre Loupy et al.   NEW ENGLAND JOURNAL OF MEDICINE

Metabolomics of Human Intestinal Transplant Rejection

(2012) R. Girlanda et al.   AMERICAN JOURNAL OF TRANSPLANTATION

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Systematic Review: Kidney Transplantation Compared With Dialysis in Clinically Relevant Outcomes

(2011) M. Tonelli et al.   AMERICAN JOURNAL OF TRANSPLANTATION

Antibody-mediated rejection in kidney transplantation: an update

(2011) Jessica G Lucas et al.   EXPERT OPINION ON PHARMACOTHERAPY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Efficacy of combined or single use ofLactobacillus crispatusLT116 andL. johnsoniiLT171 on broiler performance

(2010) H.R. Taheri et al.   BRITISH POULTRY SCIENCE

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

(2008) H. Sokol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA