The Memory Problem for Neutral Mutational Models of Evolution

Evolution of transcription factor binding through sequence variations and turnover of binding sites

(2022) Gat Krieger et al.   GENOME RESEARCH

Constructive Neutral Evolution 20 Years Later

(2021) Sergio A. Muñoz-Gómez et al.   JOURNAL OF MOLECULAR EVOLUTION

Molecular and evolutionary processes generating variation in gene expression

(2020) Mark S. Hill et al.   NATURE REVIEWS GENETICS

The Effects of Demography and Genetics on the Neutral Distribution of Quantitative Traits

(2019) Evan M. Koch   GENETICS

Empirical measures of mutational effects define neutral models of regulatory evolution in Saccharomyces cerevisiae

(2019) Andrea Hodgins-Davis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Random sequences rapidly evolve into de novo promoters

(2018) Avihu H. Yona et al.   Nature Communications

Selection on metabolic pathway function in the presence of mutation-selection-drift balance leads to rate-limiting steps that are not evolutionarily stable

(2016) Alena Orlenko et al.   Biology Direct

Flux Control in Glycolysis Varies Across the Tree of Life

(2016) Alena Orlenko et al.   JOURNAL OF MOLECULAR EVOLUTION

Fast turnover of genome transcription across evolutionary time exposes entire non-coding DNA to de novo gene emergence

(2016) Rafik Neme et al.   eLife

Thinking too positive? Revisiting current methods of population genetic selection inference

(2014) Claudia Bank et al.   TRENDS IN GENETICS

Population Size Dependence of Fitness Effect Distribution and Substitution Rate Probed by Biophysical Model of Protein Thermostability

(2013) Richard A. Goldstein   Genome Biology and Evolution

Extensive Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression

(2013) Mathilde Paris et al.   PLoS Genetics

Estimating the Distribution of Selection Coefficients from Phylogenetic Data Using Sitewise Mutation-Selection Models

(2011) A. U. Tamuri et al.   GENETICS