Ecological and functional roles of bacteriophages in contrasting environments: marine, terrestrial and human gut

Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes

(2022) Xiaoxuan Zheng et al.   ISME Journal

Novel Viral Communities Potentially Assisting in Carbon, Nitrogen, and Sulfur Metabolism in the Upper Slope Sediments of Mariana Trench

(2022) Jiulong Zhao et al.   mSystems

The virota and its transkingdom interactions in the healthy infant gut

(2022) Leen Beller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity in the soil virosphere: to infinity and beyond?

(2022) Simon Roux et al.   TRENDS IN MICROBIOLOGY

Isolation and Characterization of a Novel Cyanophage Encoding Multiple Auxiliary Metabolic Genes

(2022) Cuhuang Rong et al.   Viruses-Basel

Contrasting Impact of Viral Activity on Prokaryotic Populations in the Coastal and Offshore Regions of the Eastern Arabian Sea

(2022) PK Shruthi et al.   Diversity-Basel

Dysbiosis and intestinal inflammation caused by Salmonella Typhimurium in mice can be alleviated by preadministration of a lytic phage

(2022) Hongduo Bao et al.   MICROBIOLOGICAL RESEARCH

Diversity and ecological footprint of Global Ocean RNA viruses

(2022) Guillermo Dominguez-Huerta et al.   SCIENCE

Experimental evidence for the impact of phages on mineralization of soil-derived dissolved organic matter under different temperature regimes

(2022) Shuang Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The genomic content and context of auxiliary metabolic genes in roseophages

(2021) Xingyu Huang et al.   ENVIRONMENTAL MICROBIOLOGY

Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity

(2021) Zexin Li et al.   ISME Journal

Individuals at risk for rheumatoid arthritis harbor differential intestinal bacteriophage communities with distinct metabolic potential

(2021) Mihnea R. Mangalea et al.   Cell Host & Microbe

Diverse Viruses Carrying Genes for Microbial Extremotolerance in the Atacama Desert Hyperarid Soil

(2021) Yunha Hwang et al.   mSystems

Highly diverse flavobacterial phages isolated from North Sea spring blooms

(2021) Nina Bartlau et al.   ISME Journal

Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages

(2021) Kristopher Kieft et al.   Nature Communications

Virus-associated organosulfur metabolism in human and environmental systems

(2021) Kristopher Kieft et al.   Cell Reports

Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation

(2021) Akbar Adjie Pratama et al.   PeerJ

Enhanced mutualistic symbiosis between soil phages and bacteria with elevated chromium-induced environmental stress

(2021) Dan Huang et al.   Microbiome

Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome

(2021) Stephen Nayfach et al.   Nature Microbiology

Active virus-host interactions at sub-freezing temperatures in Arctic peat soil

(2021) Gareth Trubl et al.   Microbiome

The stepwise assembly of the neonatal virome is modulated by breastfeeding

(2020) Guanxiang Liang et al.   NATURE

DRAM for distilling microbial metabolism to automate the curation of microbiome function

(2020) Michael Shaffer et al.   NUCLEIC ACIDS RESEARCH

Genome Analysis of Two Novel Synechococcus Phages That Lack Common Auxiliary Metabolic Genes: Possible Reasons and Ecological Insights by Comparative Analysis of Cyanomyoviruses

(2020) Tong Jiang et al.   Viruses-Basel

VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences

(2020) Kristopher Kieft et al.   Microbiome

The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut

(2020) Ann C. Gregory et al.   Cell Host & Microbe

Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline

(2020) Paraskevi Mara et al.   ISME Journal

Large freshwater phages with the potential to augment aerobic methane oxidation

(2020) Lin-Xing Chen et al.   Nature Microbiology

Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters

(2020) M. Consuelo Gazitúa et al.   ISME Journal

Cenote-Taker 2 democratizes virus discovery and sequence annotation

(2020) Michael J Tisza et al.   Virus Evolution

Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis

(2019) Lasha Gogokhia et al.   Cell Host & Microbe

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

(2019) Ann C. Gregory et al.   CELL

The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific

(2019) Andrey N. Shkoporov et al.   Cell Host & Microbe

Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems

(2019) Amy E. Zimmerman et al.   NATURE REVIEWS MICROBIOLOGY

Ménage à trois in the human gut: interactions between host, bacteria and phages

(2017) Mohammadali Khan Mirzaei et al.   NATURE REVIEWS MICROBIOLOGY

Inflammation boosts bacteriophage transfer between Salmonella spp.

(2017) Médéric Diard et al.   SCIENCE

Diversity and Ecology of Viruses in Hyperarid Desert Soils

(2015) Olivier Zablocki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Patterns and ecological drivers of ocean viral communities

(2015) J. R. Brum et al.   SCIENCE

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY