Individuals at risk for rheumatoid arthritis harbor differential intestinal bacteriophage communities with distinct metabolic potential

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Parallel Genomics Uncover Novel Enterococcal-Bacteriophage Interactions

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Gut Microbiota Modulate CD8 T Cell Responses to Influence Colitis-Associated Tumorigenesis

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Heightened Levels of Antimicrobial Response Factors in Patients With Rheumatoid Arthritis

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Infection with Bacteroides Phage BV01 Alters the Host Transcriptome and Bile Acid Metabolism in a Common Human Gut Microbe

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Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins

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Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome

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Mucosa Biology and the Development of Rheumatoid Arthritis: Potential for Prevention by Targeting Mucosal Processes

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Comparative Analysis of Fecal Microbiota Composition Between Rheumatoid Arthritis and Osteoarthritis Patients

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Gut Bacteriophage: Current Understanding and Challenges

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Prevotella Copri and Microbiota in Rheumatoid Arthritis: Fully Convincing Evidence?

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Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease

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A selective gut bacterial bile salt hydrolase alters host metabolism

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Beyond Bacteria: Bacteriophage-Eukaryotic Host Interactions Reveal Emerging Paradigms of Health and Disease

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Antibody Responses to Citrullinated and Noncitrullinated Antigens in the Sputum of Subjects With Rheumatoid Arthritis and Subjects at Risk for Development of Rheumatoid Arthritis

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Modulation of Inflammatory Arthritis in Mice by Gut Microbiota Through Mucosal Inflammation and Autoantibody Generation

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Phage puppet masters of the marine microbial realm

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Murine colitis reveals a disease-associated bacteriophage community

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Precision editing of the gut microbiota ameliorates colitis

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Rheumatoid arthritis and the mucosal origins hypothesis: protection turns to destruction

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Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

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Anti-Citrullinated Protein Antibodies Are Associated With Neutrophil Extracellular Traps in the Sputum in Relatives of Rheumatoid Arthritis Patients

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Evidence of the Immune Relevance of Prevotella copri , a Gut Microbe, in Patients With Rheumatoid Arthritis

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Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

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High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection

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Molecular Basis for Lytic Bacteriophage Resistance in Enterococci

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Next-Generation “-omics” Approaches Reveal a Massive Alteration of Host RNA Metabolism during Bacteriophage Infection of Pseudomonas aeruginosa

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Functional Intestinal Bile Acid 7α-Dehydroxylation by Clostridium scindens Associated with Protection from Clostridium difficile Infection in a Gnotobiotic Mouse Model

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Dysbiosis Contributes to Arthritis Development via Activation of Autoreactive T Cells in the Intestine

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Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes

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Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

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The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment

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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

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The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

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Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

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Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

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Performance of Anti-Cyclic Citrullinated Peptide Assays Differs in Subjects at Increased Risk of Rheumatoid Arthritis and Subjects With Established Disease

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Microbiome and mucosal inflammation as extra-articular triggers for rheumatoid arthritis and autoimmunity

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Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

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Bacteriophage adhering to mucus provide a non-host-derived immunity

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Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

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Multiple cytokines and chemokines are associated with rheumatoid arthritis-related autoimmunity in first-degree relatives without rheumatoid arthritis: Studies of the Aetiology of Rheumatoid Arthritis (SERA)

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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

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Phylogenomics of T4 cyanophages: lateral gene transfer in the ‘core’ and origins of host genes

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CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome

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Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases

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Diversity, stability and resilience of the human gut microbiota

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Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

Structure and Mechanism of PhnP, a Phosphodiesterase of the Carbon-Phosphorus Lyase Pathway

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The human gut virome: Inter-individual variation and dynamic response to diet

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The microbiome and rheumatoid arthritis

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Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

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A prospective approach to investigating the natural history of preclinical rheumatoid arthritis (RA) using first-degree relatives of probands with RA

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Explaining microbial population genomics through phage predation

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Bacterial Tag–Encoded FLX Amplicon Pyrosequencing (bTEFAP) for Microbiome Studies: Bacterial Diversity in the Ileum of Newly Weaned Salmonella-Infected Pigs

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