Genome Analysis of Two Novel Synechococcus Phages That Lack Common Auxiliary Metabolic Genes: Possible Reasons and Ecological Insights by Comparative Analysis of Cyanomyoviruses

Isolation and complete genome sequence of a novel cyanophage, S-B05, infecting an estuarine Synechococcus strain: insights into environmental adaptation

(2020) Tong Jiang et al.   ARCHIVES OF VIROLOGY

Cyanophage MazG is a pyrophosphohydrolase but unable to hydrolyse magic spot nucleotides

(2019) Branko Rihtman et al.   Environmental Microbiology Reports

Metagenomic Characterization of the Viral Community of the South Scotia Ridge

(2019) Qingwei Yang et al.   Viruses-Basel

The Genome Sequence of a Novel Cyanophage S-B64 from the Yellow Sea, China

(2019) Siyuan You et al.   CURRENT MICROBIOLOGY

Novel phage-host interactions and evolution as revealed by a cyanomyovirus isolated from an estuarine environment

(2018) Yongle Xu et al.   ENVIRONMENTAL MICROBIOLOGY

Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters

(2018) Caroline Chénard et al.   Marine Genomics

Isolation and genome sequencing of the novel marine phage PHS3 from the Yellow Sea, China

(2018) Huifang Li et al.   Marine Genomics

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

Virus taxonomy in the age of metagenomics

(2017) Peter Simmonds et al.   NATURE REVIEWS MICROBIOLOGY

A Novel Roseosiphophage Isolated from the Oligotrophic South China Sea

(2017) Yunlan Yang et al.   Viruses-Basel

A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells

(2017) Svetlana Fridman et al.   Nature Microbiology

Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer

(2016) Ann C. Gregory et al.   BMC GENOMICS

Isolation and Genome Sequencing of a Novel Pseudoalteromonas Phage PH1

(2016) Zhaoyang Liu et al.   CURRENT MICROBIOLOGY

Genomic diversification of marine cyanophages into stable ecotypes

(2016) Marcia F. Marston et al.   ENVIRONMENTAL MICROBIOLOGY

OrthoANI: An improved algorithm and software for calculating average nucleotide identity

(2016) Imchang Lee et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete genome sequence of bacteriophage P2559Y, a marine phage that infects Croceibacter atlanticus HTCC2559

(2016) Ilnam Kang et al.   Marine Genomics

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic content and context of auxiliary metabolic genes in marine cyanomyoviruses

(2016) Lisa T. Crummett et al.   VIROLOGY

Comparison of the Seasonal Variations of Synechococcus Assemblage Structures in Estuarine Waters and Coastal Waters of Hong Kong

(2015) Xiaomin Xia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space

(2014) Li Deng et al.   NATURE

Explaining microbial genomic diversity in light of evolutionary ecology

(2014) Otto X. Cordero et al.   NATURE REVIEWS MICROBIOLOGY

Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis

(2014) Hagay Enav et al.   Microbiome

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

(2013) Bhakti Dwivedi et al.   BMC EVOLUTIONARY BIOLOGY

Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent

(2013) Libusha Kelly et al.   ISME Journal

Analysis and Phylogeny of Small Heat Shock Proteins from Marine Viruses and Their Cyanobacteria Host

(2013) Halim Maaroufi et al.   PLoS One

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans

(2012) G. Sabehi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid diversification of coevolving marine Synechococcus and a virus

(2012) M. F. Marston et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of genome base composition and genome size in bacteria

(2012) Hiromi Nishida   Frontiers in Microbiology

Development ofphoHas a Novel Signature Gene for Assessing Marine Phage Diversity

(2011) Dawn B. Goldsmith et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A freshwater cyanophage whose genome indicates close relationships to photosynthetic marine cyanomyophages

(2011) Theo W. Dreher et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrogen Sources and Rates of Phytoplankton Uptake in Different Regions of Hong Kong Waters in Summer

(2011) Jie Xu et al.   Estuaries and Coasts

pknE, a serine/threonine kinase of Mycobacterium tuberculosis modulates multiple apoptotic paradigms

(2011) Dinesh Kumar et al.   INFECTION GENETICS AND EVOLUTION

Marine cyanophages: tinkering with the electron transport chain

(2011) Alon Philosof et al.   ISME Journal

Cyanophage tRNAs may have a role in cross-infectivity of oceanic Prochlorococcus and Synechococcus hosts

(2011) Hagay Enav et al.   ISME Journal

Chemical Basis of Peptidoglycan Discrimination by PrkC, a Key Kinase Involved in Bacterial Resuscitation from Dormancy

(2011) Flavia Squeglia et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

(2011) L. R. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

(2010) Matthew B. Sullivan et al.   ENVIRONMENTAL MICROBIOLOGY

Unicellular Cyanobacterial Distributions Broaden the Oceanic N2 Fixation Domain

(2010) P. H. Moisander et al.   SCIENCE

Serine/Threonine Phosphatases: Mechanism through Structure

(2009) Yigong Shi   CELL

Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence ofSynechococcushost genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution

(2009) Andrew D. Millard et al.   ENVIRONMENTAL MICROBIOLOGY

Carrying photosynthesis genes increases ecological fitness of cyanophagein silico

(2009) Ferdi L. Hellweger   ENVIRONMENTAL MICROBIOLOGY

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

The impact of serine/threonine phosphorylation in Staphylococcus aureus

(2009) Knut Ohlsen et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Phylogenetic Diversity of Sequences of Cyanophage Photosynthetic Gene psbA in Marine and Freshwaters

(2008) C. Chenard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Alternative photosynthetic electron flow to oxygen in marine Synechococcus

(2008) Shaun Bailey et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Genomic and Proteomic Analysis of phiEco32, a Novel Escherichia coli Bacteriophage

(2008) Dhruti Savalia et al.   JOURNAL OF MOLECULAR BIOLOGY

Evidence for the Intense Exchange of MazG in Marine Cyanophages by Horizontal Gene Transfer

(2008) Michael J. Bryan et al.   PLoS One