Deeper genomic insights into tomato CLE genes repertoire identify new active peptides

HSL1 and BAM1/2 impact epidermal cell development by sensing distinct signaling peptides

(2022) Andra-Octavia Roman et al.   Nature Communications

Small signaling peptides mediate plant adaptions to abiotic environmental stress

(2022) Heping Xie et al.   PLANTA

Spatial range, temporal span, and promiscuity of CLE-RLK signaling

(2022) Madhumitha Narasimhan et al.   Frontiers in Plant Science

Innovation, conservation, and repurposing of gene function in root cell type development

(2021) Kaisa Kajala et al.   CELL

Conserved and differentiated functions of CIK receptor kinases in modulating stem cell signaling in Arabidopsis

(2021) Yafen Zhu et al.   Molecular Plant

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

CLAVATA3/EMBRYO SURROUNDING REGION (CLE) Gene Family in Potato (Solanum tuberosum L.): Identification and Expression Analysis

(2021) Maria Gancheva et al.   Agronomy-Basel

WOX going on: CLE peptides in plant development

(2021) Andrew C. Willoughby et al.   CURRENT OPINION IN PLANT BIOLOGY

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates

(2021) Andrew D Yates et al.   NUCLEIC ACIDS RESEARCH

MtSSPdb: the Medicago truncatula Small Secreted Peptide Database

(2020) Clarissa Boschiero et al.   PLANT PHYSIOLOGY

Evolution of CLE peptide signalling

(2020) CD Whitewoods   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Recent Advances in Arabidopsis CLE Peptide Signaling

(2020) Jennifer C. Fletcher   TRENDS IN PLANT SCIENCE

Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences

(2020) Zhe Zhang et al.   BMC GENOMICS

Processing and formation of bioactive CLE40 peptide are controlled by post-translational proline hydroxylation

(2020) Nils Stührwohldt et al.   PLANT PHYSIOLOGY

Evolution of buffering in a genetic circuit controlling plant stem cell proliferation

(2019) Daniel Rodriguez-Leal et al.   NATURE GENETICS

The role of peptides cleaved from protein precursors in eliciting plant stress reactions

(2019) Ying‐Lan Chen et al.   NEW PHYTOLOGIST

Deciphering the biological processes underlying tomato biomass production and composition

(2019) Daniela D'Esposito et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Translational regulation contributes to the elevated CO 2 response in two Solanum species

(2019) Sharon B. Gray et al.   PLANT JOURNAL

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

CLE peptide tri-arabinosylation and peptide domain sequence composition are essential for SUNN-dependent autoregulation of nodulation in Medicago truncatula

(2018) Nijat Imin et al.   NEW PHYTOLOGIST

Triarabinosylation is required for nodulation-suppressive CLE peptides to systemically inhibit nodulation in Pisum sativum

(2018) April H. Hastwell et al.   PLANT CELL AND ENVIRONMENT

A protocol for combining fluorescent proteins with histological stains for diverse cell wall components

(2018) Robertas Ursache et al.   PLANT JOURNAL

Transcriptome analysis highlights nuclear control of chloroplast development in the shoot apex

(2018) Vijay Dalal et al.   Scientific Reports

A small peptide modulates stomatal control via abscisic acid in long-distance signalling

(2018) Fuminori Takahashi et al.   NATURE

CLAVATA1 controls distinct signaling outputs that buffer shoot stem cell proliferation through a two-step transcriptional compensation loop

(2017) Zachary L. Nimchuk   PLoS Genetics

Crystal structure of PXY-TDIF complex reveals a conserved recognition mechanism among CLE peptide-receptor pairs

(2016) Heqiao Zhang et al.   CELL RESEARCH

Comprehensive identification and clustering of CLV3/ESR-related (CLE) genes in plants finds groups with potentially shared function

(2016) David M. Goad et al.   NEW PHYTOLOGIST

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

A cascade of arabinosyltransferases controls shoot meristem size in tomato

(2015) Cao Xu et al.   NATURE GENETICS

The Plant Peptidome: An Expanding Repertoire of Structural Features and Biological Functions

(2015) Patrizia Tavormina et al.   PLANT CELL

Genome-wide characterization, expression and functional analysis of CLV3/ESR gene family in tomato

(2014) Yu Zhang et al.   BMC GENOMICS

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

(2014) Noe Fernandez-Pozo et al.   NUCLEIC ACIDS RESEARCH

Root-derived CLE glycopeptides control nodulation by direct binding to HAR1 receptor kinase

(2013) Satoru Okamoto et al.   Nature Communications

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Chemical Synthesis of Arabidopsis CLV3 Glycopeptide Reveals the Impact of Hydroxyproline Arabinosylation on Peptide Conformation and Activity

(2012) Hidefumi Shinohara et al.   PLANT AND CELL PHYSIOLOGY

Regulation of Arabidopsis Embryo and Endosperm Development by the Polypeptide Signaling Molecule CLE8

(2012) E. Fiume et al.   PLANT CELL

Tabix: fast retrieval of sequence features from generic TAB-delimited files

(2011) H. Li   BIOINFORMATICS

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Roles of Different CLE Domains in Arabidopsis CLE Polypeptide Activity and Functional Specificity

(2010) Ling Meng et al.   Molecular Plant