Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences

CLE25 peptide regulates phloem initiation in Arabidopsis through a CLERK‐CLV2 receptor complex

(2019) Shi‐Chao Ren et al.   Journal of Integrative Plant Biology

A xylem‐produced peptide PtrCLE20 inhibits vascular cambium activity in Populus

(2019) Yingying Zhu et al.   PLANT BIOTECHNOLOGY JOURNAL

Control of Organ Abscission and Other Cell Separation Processes by Evolutionary Conserved Peptide Signaling

(2019) Chun-Lin Shi et al.   Plants-Basel

Hormone-like peptides and small coding genes in plant stress signaling and development

(2019) Fuminori Takahashi et al.   CURRENT OPINION IN PLANT BIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

A small peptide modulates stomatal control via abscisic acid in long-distance signalling

(2018) Fuminori Takahashi et al.   NATURE

Look Closely, the Beautiful May Be Small: Precursor-Derived Peptides in Plants

(2018) Vilde Olsson et al.   Annual Review of Plant Biology

CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in Arabidopsis thaliana

(2018) Luosha Zhang et al.   PLANT CELL AND ENVIRONMENT

Dual CLAVATA3 peptides in Arabidopsis shoot stem cell signaling

(2017) Hyeon-Ji Kim et al.   JOURNAL OF PLANT BIOLOGY

Root diffusion barrier control by a vasculature-derived peptide binding to the SGN3 receptor

(2017) Verónica G. Doblas et al.   SCIENCE

A peptide hormone required for Casparian strip diffusion barrier formation in Arabidopsis roots

(2017) Takuya Nakayama et al.   SCIENCE

Author Correction: CLE peptide-encoding gene families in Medicago truncatula and Lotus japonicus, compared with those of soybean, common bean and Arabidopsis

(2017) April H. Hastwell et al.   Scientific Reports

Identification and characterization of the Populus trichocarpa CLE family

(2016) Huibin Han et al.   BMC GENOMICS

Identification, expression, and functional analysis of CLE genes in radish (Raphanus sativus L.) storage root

(2016) Maria S. Gancheva et al.   BMC PLANT BIOLOGY

Crystal structure of PXY-TDIF complex reveals a conserved recognition mechanism among CLE peptide-receptor pairs

(2016) Heqiao Zhang et al.   CELL RESEARCH

CLAVATA 1-type receptors in plant development

(2016) Ora Hazak et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comprehensive identification and clustering of CLV3/ESR-related (CLE) genes in plants finds groups with potentially shared function

(2016) David M. Goad et al.   NEW PHYTOLOGIST

Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees

(2016) Zilong He et al.   NUCLEIC ACIDS RESEARCH

Crystal structure of the plant receptor-like kinase TDR in complex with the TDIF peptide

(2016) Junko Morita et al.   Nature Communications

Primary root protophloem differentiation requires balanced phosphatidylinositol-4,5-biphosphate levels and systemically affects root branching

(2015) A. Rodriguez-Villalon et al.   DEVELOPMENT

Genome-wide annotation and characterization of CLAVATA/ESR (CLE) peptide hormones of soybean (Glycine max) and common bean (Phaseolus vulgaris), and their orthologues ofArabidopsis thaliana

(2015) April H. Hastwell et al.   JOURNAL OF EXPERIMENTAL BOTANY

Modulation ofArabidopsisand monocot root architecture by CLAVATA3/EMBRYO SURROUNDING REGION 26 peptide

(2015) Nathan Czyzewicz et al.   JOURNAL OF EXPERIMENTAL BOTANY

TheIDA/IDA-LIKEandPIP/PIP-LIKEgene families inArabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide

(2015) Ane Kjersti Vie et al.   JOURNAL OF EXPERIMENTAL BOTANY

A cascade of arabinosyltransferases controls shoot meristem size in tomato

(2015) Cao Xu et al.   NATURE GENETICS

The Plant Genome Integrative Explorer Resource: PlantGenIE.org

(2015) David Sundell et al.   NEW PHYTOLOGIST

CLE peptide signaling in plants - the power of moving around

(2015) Melis Kucukoglu et al.   PHYSIOLOGIA PLANTARUM

The Plant Peptidome: An Expanding Repertoire of Structural Features and Biological Functions

(2015) Patrizia Tavormina et al.   PLANT CELL

Posttranslationally Modified Small-Peptide Signals in Plants

(2014) Yoshikatsu Matsubayashi   Annual Review of Plant Biology

Genome-wide characterization, expression and functional analysis of CLV3/ESR gene family in tomato

(2014) Yu Zhang et al.   BMC GENOMICS

Bioinformatic and phylogenetic analysis of the CLAVATA3/EMBRYO-SURROUNDING REGION (CLE) and the CLE-LIKE signal peptide genes in the Pinophyta

(2014) Timothy J Strabala et al.   BMC PLANT BIOLOGY

CLE6expression recovers gibberellin deficiency to promote shoot growth in Arabidopsis

(2014) Haniyeh Bidadi et al.   PLANT JOURNAL

A Novel Pollen-Pistil Interaction Conferring High-Temperature Tolerance during Reproduction via CLE45 Signaling

(2013) Satoshi Endo et al.   CURRENT BIOLOGY

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

Antagonistic Peptide Technology for Functional Dissection of CLV3/ESR Genes in Arabidopsis

(2013) X.-F. Song et al.   PLANT PHYSIOLOGY

Suppression of Arabidopsis protophloem differentiation and root meristem growth by CLE45 requires the receptor-like kinase BAM3

(2013) S. Depuydt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of Arabidopsis Embryo and Endosperm Development by the Polypeptide Signaling Molecule CLE8

(2012) E. Fiume et al.   PLANT CELL

Small Signaling Peptides in Arabidopsis Development: How Cells Communicate Over a Short Distance

(2012) E. Murphy et al.   PLANT CELL

Biochemical mapping of a ligand-binding domain within Arabidopsis BAM1 reveals diversified ligand recognition mechanisms of plant LRR-RKs

(2012) Hidefumi Shinohara et al.   PLANT JOURNAL

CLE-like (CLEL) peptides control the pattern of root growth and lateral root development in Arabidopsis

(2012) L. Meng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Establishment and maintenance of vascular cell communities through local signaling

(2010) Yuki Hirakawa et al.   CURRENT OPINION IN PLANT BIOLOGY

Regulation of Vascular Development by CLE Peptide-receptor Systems

(2010) Yuki Hirakawa et al.   Journal of Integrative Plant Biology

CLE Peptides can Negatively Regulate Protoxylem Vessel Formation via Cytokinin Signaling

(2010) Yuki Kondo et al.   PLANT AND CELL PHYSIOLOGY

CLE Peptides Control Medicago truncatula Nodulation Locally and Systemically

(2010) V. Mortier et al.   PLANT PHYSIOLOGY

CLE14/CLE20 peptides may interact with CLAVATA2/CORYNE receptor-like kinases to irreversibly inhibit cell division in the root meristem of Arabidopsis

(2010) Ling Meng et al.   PLANTA

A Signaling Module Controlling the Stem Cell Niche in Arabidopsis Root Meristems

(2009) Yvonne Stahl et al.   CURRENT BIOLOGY

A glycopeptide regulating stem cell fate in Arabidopsis thaliana

(2009) Kentaro Ohyama et al.   Nature Chemical Biology

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Plant peptides in signalling: looking for new partners

(2009) Melinka A. Butenko et al.   TRENDS IN PLANT SCIENCE

Dual assay for MCLV3 activity reveals structure–activity relationship of CLE peptides

(2008) Tatsuhiko Kondo et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Bioinformatic analysis of the CLE signaling peptide family

(2008) Karsten Oelkers et al.   BMC PLANT BIOLOGY

Nod Factor/Nitrate-Induced CLE Genes that Drive HAR1-Mediated Systemic Regulation of Nodulation

(2008) Satoru Okamoto et al.   PLANT AND CELL PHYSIOLOGY

Identification of a biologically active, small, secreted peptide in Arabidopsis byin silicogene screening, followed by LC-MS-based structure analysis

(2008) Kentaro Ohyama et al.   PLANT JOURNAL

Plant CLE peptides from two distinct functional classes synergistically induce division of vascular cells

(2008) R. Whitford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system

(2008) Y. Hirakawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA