Hypoxia alters glucose and lipid metabolisms in golden pompano (Trachinotus blochii)

Effects of hypoxia and reoxygenation on gill remodeling, apoptosis, and oxidative stress in hypoxia-tolerant new variety blunt snout bream (Megalobrama amblycephala)

(2022) Liang Shuang et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

CerS1 but Not CerS5 Gene Silencing, Improves Insulin Sensitivity and Glucose Uptake in Skeletal Muscle

(2022) Agnieszka U. Błachnio-Zabielska et al.   Cells

Multi-omics analysis reveals the glycolipid metabolism response mechanism in the liver of genetically improved farmed Tilapia (GIFT, Oreochromis niloticus) under hypoxia stress

(2021) Jun-Lei Ma et al.   BMC GENOMICS

PPARγ regulates fabp4 expression to increase DHA content in golden pompano (Trachinotus ovatus) hepatocytes

(2021) Caixia Lei et al.   BRITISH JOURNAL OF NUTRITION

Integrated metabolome and transcriptome analyses revealing the effects of thermal stress on lipid metabolism in juvenile turbot Scophthalmus maximus

(2021) Tingting Zhao et al.   JOURNAL OF THERMAL BIOLOGY

The Role of Ceramide Metabolism and Signaling in the Regulation of Mitophagy and Cancer Therapy

(2021) Megan Sheridan et al.   Cancers

Golden pompano (Trachinotus blochii) adapts to acute hypoxic stress by altering the preferred mode of energy metabolism

(2021) Jun Long Sun et al.   AQUACULTURE

Comparative transcriptomic analysis of the brain in Takifugu rubripes shows its tolerance to acute hypoxia

(2021) Mingxiu Bao et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Effects of acute hypoxia and reoxygenation on oxygen sensors, respiratory metabolism, oxidative stress, and apoptosis in hybrid yellow catfish “Huangyou-1”

(2021) Xueying Pei et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Spatial and temporal changes of dissolved oxygen in waters of the Pajarales complex, Ciénaga Grande de Santa Marta: Two decades of monitoring

(2021) Luisa F. Espinosa-Díaz et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Variable coastal hypoxia exposure and drivers across the southern California Current

(2021) Natalie H. N. Low et al.   Scientific Reports

Physiological Responses to Hypoxia on Triglyceride Levels

(2021) Renée Morin et al.   Frontiers in Physiology

Genome-wide association study reveals multiple novel SNPs and putative candidate genes associated with low oxygen tolerance in golden pompano Trachinotus ovatus (Linnaeus 1758)

(2021) Li-Ze San et al.   AQUACULTURE

Skin transcriptome and physiological analyses reveal the metabolic and immune responses of yellow catfish (Pelteobagrus fulvidraco) to acute hypoxia

(2021) Man Wang et al.   AQUACULTURE

Hypoxia- and hyperoxia-related gene expression dynamics during developmental critical windows of the tropical gar Atractosteus tropicus

(2021) Gil Martínez-Bautista et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Identification of Candidate Genes Associated With Hypoxia Tolerance in Trachinotus blochii Using Bulked Segregant Analysis and RNA-Seq

(2021) Yifan Liu et al.   Frontiers in Genetics

Transcriptome Analysis of Gills Provides Insights Into Translation Changes Under Hypoxic Stress and Reoxygenation in Golden Pompano, Trachinotus ovatus (Linnaeus 1758)

(2021) Lize San et al.   Frontiers in Marine Science

Combined exposure to hypoxia and ammonia aggravated biological effects on glucose metabolism, oxidative stress, inflammation and apoptosis in largemouth bass (Micropterus salmoides)

(2020) Liulan Zhao et al.   AQUATIC TOXICOLOGY

Effects of hypoxia on the behavior and physiology of kelp forest fishes

(2020) Evan G. Mattiasen et al.   GLOBAL CHANGE BIOLOGY

miR-34a Regulates the Activity of HIF-1a and P53 Signaling Pathways by Promoting GLUT1 in Genetically Improved Farmed Tilapia (GIFT, Oreochromis niloticus) Under Hypoxia Stress

(2020) Jun Qiang et al.   Frontiers in Physiology

Abnormal lipid metabolism induced apoptosis of spermatogenic cells by increasing testicular HSP60 protein expression

(2020) Lixian Cheng et al.   ANDROLOGIA

Growth, metabolism and respiration in Nile tilapia (Oreochromis niloticus) exposed to chronic or periodic hypoxia

(2020) Kwasi Adu Obirikorang et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Silencing of the phosphofructokinase gene impairs glycolysis and causes abnormal locomotion in the subterranean termite Reticulitermes chinensis Snyder

(2020) A. Hassan et al.   INSECT MOLECULAR BIOLOGY

Hepatopancreas Transcriptome Profiling Analysis Reveals Physiological Responses to Acute Hypoxia and Reoxygenation in Juvenile Qingtian Paddy Field Carp Cyprinus carpio var qingtianensis

(2020) Ming Qi et al.   Frontiers in Physiology

Energetics as a lens to understanding aquatic insect's responses to changing temperature, dissolved oxygen and salinity regimes

(2020) Wilco CEP Verberk et al.   Current Opinion in Insect Science

Transcriptome analysis of liver provides insight into metabolic and translation changes under hypoxia and reoxygenation stress in silver sillago (Sillago sihama)

(2020) Changxu Tian et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Genome-wide identification, expression and functional analysis of the phosphofructokinase gene family in Chinese white pear (Pyrus bretschneideri)

(2019) Hongmei Lü et al.   GENE

Fish response to hypoxia stress: growth, physiological, and immunological biomarkers

(2019) Mohsen Abdel-Tawwab et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Acting locally - affecting globally: RNA sequencing of gilthead sea bream with a mild Sparicotyle chrysophrii infection reveals effects on apoptosis, immune and hypoxia related genes

(2019) M. Carla Piazzon et al.   BMC GENOMICS

Response of AMP-activated protein kinase and lactate metabolism of largemouth bass (Micropterus salmoides) under acute hypoxic stress

(2019) S. Yang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metabolic rate and hypoxia tolerance in Girardinichthys multiradiatus (Pisces: Goodeidae), an endemic fish at high altitude in tropical Mexico

(2019) Monica Vanessa Garduño Paz et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Dexmedetomidine protects hippocampal neurons against hypoxia/reoxygenation-induced apoptosis through activation HIF-1α/p53 signaling

(2019) Yan Gao et al.   LIFE SCIENCES

Interactive effect of thermal and hypoxia on largemouth bass (Micropterus salmoides) gill and liver: Aggravation of oxidative stress, inhibition of immunity and promotion of cell apoptosis

(2019) Jun-Long Sun et al.   FISH & SHELLFISH IMMUNOLOGY

Acute hypoxia changes the mode of glucose and lipid utilization in the liver of the largemouth bass (Micropterus salmoides)

(2019) Jun Long Sun et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Mapping RNA-seq reads to transcriptomes efficiently based on learning to hash method

(2019) Xueting Yu et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Metabolic response of Nile tilapia ( Oreochromis niloticus ) to acute and chronic hypoxia stress

(2018) Mengxiao Li et al.   AQUACULTURE

Advances in Hypoxia-Inducible Factor Biology

(2018) Hani Choudhry et al.   Cell Metabolism

Effects of hypoxia exposure on apoptosis and expression of membrane steroid receptors, ZIP9, mPRα, and GPER in Atlantic croaker ovaries

(2018) Kathryn Ondricek et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Dissolved oxygen transfer into a square embayment connected to an open-channel flow

(2018) M. Sanjou et al.   INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER

Hypoxia-inducible transcription factors in fish: expression, function and interconnection with the circadian clock

(2018) Bernd Pelster et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Physiological responses to cold stress in the gills of discus fish ( Symphysodon aequifasciatus ) revealed by conventional biochemical assays and GC-TOF-MS metabolomics

(2018) Bin Wen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A selective inhibitor of ceramide synthase 1 reveals a novel role in fat metabolism

(2018) Nigel Turner et al.   Nature Communications

Distinct metabolic adjustments arise from acclimation to constant hypoxia and intermittent hypoxia in estuarine killifish (Fundulus heteroclitus)

(2018) Brittney G. Borowiec et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

(2017) Tom Smith et al.   GENOME RESEARCH

Identification of HIF-1 signaling pathway in Pelteobagrus vachelli using RNA-Seq: effects of acute hypoxia and reoxygenation on oxygen sensors, respiratory metabolism, and hematology indices

(2017) Guosong Zhang et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Metabolic Interactions in the Tumor Microenvironment

(2017) Costas A. Lyssiotis et al.   TRENDS IN CELL BIOLOGY

Acclimation to prolonged hypoxia alters hemoglobin isoform expression and increases hemoglobin oxygen affinity and aerobic performance in a marine fish

(2017) Yihang K. Pan et al.   Scientific Reports

Comparative proteomic study of the response to hypoxia in the muscle of oriental river prawn (Macrobrachium nipponense)

(2016) Shengming Sun et al.   Journal of Proteomics

Measurement of glycolysis reactants by high-throughput solid phase extraction with tandem mass spectrometry: Characterization of pyrophosphate-dependent phosphofructokinase as a case study

(2015) Peter T. Rye et al.   ANALYTICAL BIOCHEMISTRY

Lipid Metabolism, Apoptosis and Cancer Therapy

(2015) Chunfa Huang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Cyclin G2: A novel independent prognostic marker in pancreatic cancer

(2015) SHINICHIRO HASEGAWA et al.   Oncology Letters

Cyclin G2 Promotes Hypoxia- Driven Local Invasion of Glioblastoma by Orchestrating Cytoskeletal Dynamics

(2015) Atsushi Fujimura et al.   NEOPLASIA

Sphingolipid metabolism and its role in the skeletal tissues

(2014) Zohreh Khavandgar et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The relationships between hypoxia-dependent markers: HIF-1alpha, EPO and EPOR in colorectal cancer

(2014) Marek Baltaziak et al.   FOLIA HISTOCHEMICA ET CYTOBIOLOGICA

Assessment of oxidative damage to DNA, transcriptional expression of key genes, lipid peroxidation and histopathological changes in carp Cyprinus carpio L. following exposure to chronic hypoxic and subsequent recovery in normoxic conditions

(2014) Sanaa A. Mustafa et al.   MUTAGENESIS

Hypoxia-Inducible Factor 1 and Cardiovascular Disease

(2013) Gregg L. Semenza   Annual Review of Physiology

Sphingolipid homeostasis in the web of metabolic routes

(2013) Auxiliadora Aguilera-Romero et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Excess post-hypoxic oxygen consumption is independent from lactate accumulation in two cyprinid fishes

(2013) J. Genz et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Hypoxia induces IGFBP3 in esophageal squamous cancer cells through HIF-1α-mediated mRNA transcription and continuous protein synthesis

(2012) Mitsuteru Natsuizaka et al.   FASEB JOURNAL

Elevated IGFBP3 Levels in Diabetic Tears: A Negative Regulator of IGF-1 Signaling in the Corneal Epithelium

(2012) Yu-Chieh Wu et al.   Ocular Surface

Hypoxia Tolerance in Sculpins Is Associated with High Anaerobic Enzyme Activity in Brain but Not in Liver or Muscle

(2012) Milica Mandic et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes

(2012) K. Shiroguchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Responses of threespine stickleback (Gasterosteus aculeatus, L) transcriptome to hypoxia

(2011) L. Leveelahti et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Hypoxia-induced mobilization of stored triglycerides in the euryoxic goby Gillichthys mirabilis

(2011) A. Y. Gracey et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Physiological, behavioral and biochemical adaptations of intertidal fishes to hypoxia

(2010) J. G. Richards   JOURNAL OF EXPERIMENTAL BIOLOGY

Characterization of a hypoxia-response element in the Epo locus of the pufferfish, Takifugu rubripes

(2010) Rashmi P. Kulkarni et al.   Marine Genomics

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

First Aid Kit for Hypoxic Survival: Sensors and Strategies

(2010) J. López‐Barneo et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Expression of HIF-1α, VEGF and EPO in peripheral blood from patients with two cardiac abnormalities associated with hypoxia

(2009) M.L. Lemus-Varela et al.   CLINICAL BIOCHEMISTRY

Altered sphingolipid metabolism induced by tumor hypoxia - New vistas in glycolipid tumor markers

(2009) Jun Yin et al.   FEBS LETTERS

Role of hypoxia in obesity-induced disorders of glucose and lipid metabolism in adipose tissue

(2008) Jun Yin et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Spreading Dead Zones and Consequences for Marine Ecosystems

(2008) R. J. Diaz et al.   SCIENCE