Hepatopancreas Transcriptome Profiling Analysis Reveals Physiological Responses to Acute Hypoxia and Reoxygenation in Juvenile Qingtian Paddy Field Carp Cyprinus carpio var qingtianensis

Optimization of the rice-fish coculture in Qingtian, China: 1. Effects of rice spacing on the growth of the paddy fish and the chemical composition of both rice and fish

(2020) Haisong Guo et al.   AQUACULTURE

Fish response to hypoxia stress: growth, physiological, and immunological biomarkers

(2019) Mohsen Abdel-Tawwab et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Transcriptome and physiology analysis identify key metabolic changes in the liver of the large yellow croaker (Larimichthys crocea) in response to acute hypoxia

(2019) Jie Ding et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Pentose phosphate pathway activity parallels lipogenesis but not antioxidant processes in rat liver

(2018) Eunsook S. Jin et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Metabolic response of Nile tilapia ( Oreochromis niloticus ) to acute and chronic hypoxia stress

(2018) Mengxiao Li et al.   AQUACULTURE

The effect of intermittent hypoxia under different temperature on the immunomodulation in Streptococcus agalactiae vaccinated Nile tilapia ( Oreochromis niloticus )

(2018) Jing Wang et al.   FISH & SHELLFISH IMMUNOLOGY

Preservation of the genetic diversity of a local common carp in the agricultural heritage rice–fish system

(2018) Weizheng Ren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GOATOOLS: A Python library for Gene Ontology analyses

(2018) D. V. Klopfenstein et al.   Scientific Reports

Air- breathing in fish: Air- breathing organs and control of respiration

(2018) Giacomo Zaccone et al.   ACTA HISTOCHEMICA

Transcriptome Analysis Provides Insights Into the Adaptive Responses to Hypoxia of a Schizothoracine Fish (Gymnocypris eckloni)

(2018) Delin Qi et al.   Frontiers in Physiology

Hypoxia Exacerbates Inflammatory Acute Lung Injury via the Toll-Like Receptor 4 Signaling Pathway

(2018) Gang Wu et al.   Frontiers in Immunology

Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

(2018) Albert Caballero-Solares et al.   BMC GENOMICS

New horizons in hypoxia signaling pathways

(2017) Christopher W. Pugh et al.   EXPERIMENTAL CELL RESEARCH

Identification of HIF-1 signaling pathway in Pelteobagrus vachelli using RNA-Seq: effects of acute hypoxia and reoxygenation on oxygen sensors, respiratory metabolism, and hematology indices

(2017) Guosong Zhang et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Comparative iTRAQ-Based Quantitative Proteomic Analysis of Pelteobagrus vachelli Liver under Acute Hypoxia: Implications in Metabolic Responses

(2017) Guosong Zhang et al.   PROTEOMICS

Foxa2 and Hif1ab regulate maturation of intestinal goblet cells by modulating agr2 expression in zebrafish embryos

(2016) Y.-R. Lai et al.   BIOCHEMICAL JOURNAL

Acute hypoxia up-regulates HIF-1α and VEGF mRNA levels in Amazon hypoxia-tolerant Oscar (Astronotus ocellatus)

(2016) R. B. Baptista et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Hypoxia causes transgenerational impairments in reproduction of fish

(2016) Simon Yuan Wang et al.   Nature Communications

Integrated analysis of mRNA-seq and miRNA-seq in the liver of Pelteobagrus vachelli in response to hypoxia

(2016) Guosong Zhang et al.   Scientific Reports

Reprogramming of glucose, fatty acid and amino acid metabolism for cancer progression

(2015) Zhaoyong Li et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Genome sequence and genetic diversity of the common carp, Cyprinus carpio

(2014) Peng Xu et al.   NATURE GENETICS

Insights into the Maize Pan-Genome and Pan-Transcriptome

(2014) C. N. Hirsch et al.   PLANT CELL

Biochemical responses of juvenile rockfish (Sebastes schlegeli) to low levels of dissolved oxygen in Gamak Bay

(2014) Jee-Hyun Jung et al.   Ocean Science Journal

Unearthing the secrets of mitochondrial ROS and glutathione in bioenergetics

(2013) Ryan J. Mailloux et al.   TRENDS IN BIOCHEMICAL SCIENCES

Role of catalase on the hypoxia/reoxygenation stress in the hypoxia-tolerant Nile tilapia

(2012) Alexis F. Welker et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Glutathione synthesis

(2012) Shelly C. Lu   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Purification and characterization of glucose 6-phosphate dehydrogenase (G6PD) from grass carp (Ctenopharyngodon idella) and inhibition effects of several metal ions on G6PD activity in vitro

(2012) Wei Hu et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Hypoxia-inducible factors and their roles in energy metabolism

(2012) Nobuhito Goda et al.   INTERNATIONAL JOURNAL OF HEMATOLOGY

DNA damage in fish (Anguilla anguilla) exposed to a glyphosate-based herbicide – Elucidation of organ-specificity and the role of oxidative stress

(2012) S. Guilherme et al.   MUTATION RESEARCH-GENETIC TOXICOLOGY AND ENVIRONMENTAL MUTAGENESIS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

AMP-activated protein kinase plays a role in initiating metabolic rate suppression in goldfish hepatocytes

(2011) Gigi Y. Lau et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Significance of Riverine Hypoxia for Fish: The Case of the Big Sunflower River, Mississippi1

(2011) F. Douglas Shields et al.   JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION

Ecological mechanisms underlying the sustainability of the agricultural heritage rice-fish coculture system

(2011) J. Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

NF-κB links innate immunity to the hypoxic response through transcriptional regulation of HIF-1α

(2008) Jordi Rius et al.   NATURE

Mechanisms and evolution of hypoxia tolerance in fish

(2008) M. Mandic et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES