First single-step genomic prediction and genome-wide association for body weight in Russian sturgeon (Acipenser gueldenstaedtii)

Genomic predictions for fillet yield and firmness in rainbow trout using reduced-density SNP panels

(2021) Rafet Al-Tobasei et al.   BMC GENOMICS

Genetic parameters of caviar yield, color, size and firmness using parentage assignment in an octoploid fish species, the Siberian sturgeon Acipenser baerii

(2021) A. Bestin et al.   AQUACULTURE

GWAS identified candidate variants and genes associated with acute heat tolerance of large yellow croaker

(2021) Yidi Wu et al.   AQUACULTURE

Genome-wide association analysis of adaptation to oxygen stress in Nile tilapia (Oreochromis niloticus)

(2021) Xiaofei Yu et al.   BMC GENOMICS

Genome-wide association study identifies genomic loci of sex determination, gonadal weight and gonadosomatic index traits in Takifugu bimaculatus

(2021) Mei Wang et al.   AQUACULTURE

Impact of accounting for allele dosage on genomic prediction in a simulated autopolyploid sturgeon population

(2021) Hailiang Song et al.   AQUACULTURE

Estimation of genetic parameters for growth and egg related traits in Russian sturgeon (Acipenser gueldenstaedtii)

(2021) Hailiang Song et al.   AQUACULTURE

Harnessing genomics to fast-track genetic improvement in aquaculture

(2020) Ross D. Houston et al.   NATURE REVIEWS GENETICS

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

(2020) Kang Du et al.   Nature Ecology & Evolution

Genomic prediction of growth traits for pigs in the presence of genotype by environment interactions using single-step genomic reaction norm model

(2020) Hailiang Song et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Genome-wide association study identifies loci for traits related to swim bladder in yellow drum (Nibea albiflora)

(2020) Guijia Liu et al.   AQUACULTURE

The American Paddlefish Genome Provides Novel Insights into Chromosomal Evolution and Bone Mineralization in Early Vertebrates

(2020) Peilin Cheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

Using Different Single-Step Strategies to Improve the Efficiency of Genomic Prediction on Body Measurement Traits in Pig

(2019) Hailiang Song et al.   Frontiers in Genetics

Genotype-by-environment interaction of fertility traits in Danish Holstein cattle using a single-step genomic reaction norm model

(2019) Zhe Zhang et al.   HEREDITY

Genome-wide association analysis of nutrient traits in the oyster Crassostrea gigas: genetic effect and interaction network

(2019) Jie Meng et al.   BMC GENOMICS

Hepatic nitric oxide synthase 1 adaptor protein regulates glucose homeostasis and hepatic insulin sensitivity in obese mice depending on its PDZ binding domain

(2019) Kaida Mu et al.   EBioMedicine

OUP accepted manuscript

(2018)   BIOINFORMATICS

Exploring the potential and limitations of genotyping-by-sequencing for SNP discovery and genotyping in tetraploid potato

(2018) Maxime Bastien et al.   GENOME

Reaction norm for yearling weight in beef cattle using single-step genomic evaluation

(2018) D P Oliveira et al.   JOURNAL OF ANIMAL SCIENCE

Association between RBMS1 gene rs7593730 and BCAR1 gene rs7202877 and Type 2 diabetes mellitus in the Chinese Han population

(2018) Elena V. Kazakova et al.   ACTA BIOCHIMICA POLONICA

Improving genetic evaluation of litter size and piglet mortality for both genotyped and nongenotyped individuals using a single-step method1

(2015) X. Guo et al.   JOURNAL OF ANIMAL SCIENCE

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Methods for genomic evaluation of a relatively small genotyped dairy population and effect of genotyped cow information in multiparity analyses

(2014) D.A.L. Lourenco et al.   JOURNAL OF DAIRY SCIENCE

Genome-Wide Association Studies and Heritability Estimates of Body Mass Index Related Phenotypes in Bangladeshi Adults

(2014) Molly Scannell Bryan et al.   PLoS One

Genome-wide association mapping including phenotypes from relatives without genotypes in a single-step (ssGWAS) for 6-week body weight in broiler chickens

(2014) Huiyu Wang et al.   Frontiers in Genetics

A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato

(2013) Jan G. A. M. L. Uitdewilligen et al.   PLoS One

Single-step methods for genomic evaluation in pigs

(2012) O. F. Christensen et al.   Animal

Genome-wide association mapping including phenotypes from relatives without genotypes

(2012) H. WANG et al.   Genetics Research

Genomic prediction for Nordic Red Cattle using one-step and selection index blending

(2012) G. Su et al.   JOURNAL OF DAIRY SCIENCE

Multiple trait genomic evaluation of conception rate in Holsteins

(2011) I. Aguilar et al.   JOURNAL OF DAIRY SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Hot topic: A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score1

(2010) I. Aguilar et al.   JOURNAL OF DAIRY SCIENCE

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A relationship matrix including full pedigree and genomic information

(2009) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE