Is there hybridization between diploid and tetraploid Euphrasia in a secondary contact zone?

Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (Euphrasia, Orobanchaceae)

(2022) Phen Garrett et al.   Frontiers in Plant Science

Is there hybridization between diploid and tetraploid Euphrasia in a secondary contact zone?

(2022) Max R. Brown et al.   AMERICAN JOURNAL OF BOTANY

The nature of intraspecific and interspecific genome size variation in taxonomically complex eyebrights

(2021) Hannes Becher et al.   ANNALS OF BOTANY

Natural interploidy hybridization among the key taxa involved in the origin of horticultural chrysanthemums

(2021) Shuai Qi et al.   Journal of Systematics and Evolution

Life history evolution, species differences, and phenotypic plasticity in hemiparasitic eyebrights ( Euphrasia )

(2020) Max R. Brown et al.   AMERICAN JOURNAL OF BOTANY

Structure is more robust than other clustering methods in simulated mixed-ploidy populations

(2019) Marc Stift et al.   HEREDITY

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

DNA barcoding a taxonomically complex hemiparasitic genus reveals deep divergence between ploidy levels but lack of species-level resolution

(2018) Xumei Wang et al.   AoB Plants

Supervised Multiblock Analysis in R with the ade4 Package

(2018) Stéphanie Bougeard et al.   Journal of Statistical Software

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mixed-Ploidy Species: Progress and Opportunities in Polyploid Research

(2017) Filip Kolář et al.   TRENDS IN PLANT SCIENCE

Erratum: Genetic differentiation and admixture between sibling allopolyploids in the Dactylorhiza majalis complex

(2016) F Balao et al.   HEREDITY

vcfr: a package to manipulate and visualize variant call format data in R

(2016) Brian J. Knaus et al.   Molecular Ecology Resources

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Hybridization between diploidCentaurea pseudophrygiaand tetraploidC. jacea(Asteraceae): the role of mixed pollination, unreduced gametes, and mentor effects

(2012) PETR KOUTECKÝ et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Mimulus peregrinus (Phrymaceae): A new British allopolyploid species

(2012) Mario Vallejo-Marin   PhytoKeys

Reproductive isolation and hybridization in sympatric populations of three Dactylorhiza species (Orchidaceae) with different ploidy levels

(2011) Koen De hert et al.   ANNALS OF BOTANY

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Hybridization and introgression across different ploidy levels in the Neotropical orchids Epidendrum fulgens and E. puniceoluteum (Orchidaceae)

(2010) FÁBIO PINHEIRO et al.   MOLECULAR ECOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The allopolyploidArabidopsis kamchaticaoriginated from multiple individuals ofArabidopsis lyrataandArabidopsis halleri

(2009) RIE SHIMIZU-INATSUGI et al.   MOLECULAR ECOLOGY

Introgression of fitness genes across a ploidy barrier

(2009) Mark A. Chapman et al.   NEW PHYTOLOGIST

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Evolutionary inference fromQST

(2008) MICHAEL C. WHITLOCK   MOLECULAR ECOLOGY

Intimately linked or hardly speaking? The relationship between genotype and environmental gradients in a Louisiana Iris hybrid population

(2003) Jill A. Johnston et al.   MOLECULAR ECOLOGY