Translational metagenomics and the human resistome: confronting the menace of the new millennium
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Title
Translational metagenomics and the human resistome: confronting the menace of the new millennium
Authors
Keywords
Antimicrobial resistance, Antibiotic selection pressure, Next generation sequencing, Clinical diagnostics, Bacteriophages, Public health
Journal
JOURNAL OF MOLECULAR MEDICINE-JMM
Volume 95, Issue 1, Pages 41-51
Publisher
Springer Nature
Online
2016-10-20
DOI
10.1007/s00109-016-1478-0
References
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Note: Only part of the references are listed.- Metagenomic analysis reveals that bacteriophages are reservoirs of antibiotic resistance genes
- (2016) Jéssica Subirats et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel
- (2016) Erin H. Graf et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Metagenomic Insights into Transferable Antibiotic Resistance in Oral Bacteria
- (2016) S. Sukumar et al. JOURNAL OF DENTAL RESEARCH
- Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study
- (2016) Yi-Yun Liu et al. LANCET INFECTIOUS DISEASES
- Antibiotic Resistome: Improving Detection and Quantification Accuracy for Comparative Metagenomics
- (2016) Ali H. A. Elbehery et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Population-level analysis of gut microbiome variation
- (2016) Gwen Falony et al. SCIENCE
- Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability
- (2016) Moran Yassour et al. Science Translational Medicine
- Next-generation sequencing diagnostics of bacteremia in septic patients
- (2016) Silke Grumaz et al. Genome Medicine
- Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene Transfer
- (2016) Christian J. H. von Wintersdorff et al. Frontiers in Microbiology
- Recovering complete and draft population genomes from metagenome datasets
- (2016) Naseer Sangwan et al. Microbiome
- Antibiotic Selection Pressure Determination through Sequence-Based Metagenomics
- (2015) Matthias Willmann et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Bacteriophages Isolated from Chicken Meat and the Horizontal Transfer of Antimicrobial Resistance Genes
- (2015) Amira Shousha et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Abundance of Antibiotic Resistance Genes in Bacteriophage following Soil Fertilization with Dairy Manure or Municipal Biosolids, and Evidence for Potential Transduction
- (2015) Joseph Ross et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- MetaQUAST: evaluation of metagenome assemblies
- (2015) Alla Mikheenko et al. BIOINFORMATICS
- Diagnosis of Neuroinvasive Astrovirus Infection in an Immunocompromised Adult With Encephalitis by Unbiased Next-Generation Sequencing
- (2015) Samia N. Naccache et al. CLINICAL INFECTIOUS DISEASES
- Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains
- (2015) Dagmara W. Lewandowska et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- A multifaceted ‘omics’ approach for addressing the challenge of antimicrobial resistance
- (2015) Asi Cohen et al. Future Microbiology
- Alarmingly High Segregation Frequencies of Quinolone Resistance Alleles within Human and Animal Microbiomes Are Not Explained by Direct Clinical Antibiotic Exposure
- (2015) Wesley Field et al. Genome Biology and Evolution
- Evaluation of Unbiased Next-Generation Sequencing of RNA (RNA-seq) as a Diagnostic Method in Influenza Virus-Positive Respiratory Samples
- (2015) Nicole Fischer et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Metagenomic Approach for Identification of the Pathogens Associated with Diarrhea in Stool Specimens
- (2015) Yanjiao Zhou et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Next generation sequencing improves detection of drug resistance mutations in infants after PMTCT failure
- (2015) Randall G. Fisher et al. JOURNAL OF CLINICAL VIROLOGY
- A Variegated Squirrel Bornavirus Associated with Fatal Human Encephalitis
- (2015) Bernd Hoffmann et al. NEW ENGLAND JOURNAL OF MEDICINE
- Tackling antimicrobial resistance at global and local scales
- (2015) Hellen Gelband et al. TRENDS IN MICROBIOLOGY
- Application of metagenomics in the human gut microbiome
- (2015) Wei-Lin Wang et al. WORLD JOURNAL OF GASTROENTEROLOGY
- The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome
- (2015) Geoffrey D. Hannigan et al. mBio
- Making the Leap from Research Laboratory to Clinic: Challenges and Opportunities for Next-Generation Sequencing in Infectious Disease Diagnostics
- (2015) Brittany Goldberg et al. mBio
- Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
- (2015) Alexander L. Greninger et al. Genome Medicine
- Big Data: Astronomical or Genomical?
- (2015) Zachary D. Stephens et al. PLOS BIOLOGY
- Proteomics as the final step in the functional metagenomics study of antimicrobial resistance
- (2015) Fiona Fouhy et al. Frontiers in Microbiology
- The human gut virome: a multifaceted majority
- (2015) Lesley A. Ogilvie et al. Frontiers in Microbiology
- The microbiome of uncontacted Amerindians
- (2015) J. C. Clemente et al. Science Advances
- Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes
- (2015) Shira R. Abeles et al. PLoS One
- Metagenomic insights into the human gut resistome and the forces that shape it
- (2014) Kristoffer Forslund et al. BIOESSAYS
- Forces shaping the antibiotic resistome
- (2014) Julie A. Perry et al. BIOESSAYS
- Impacts of antibiotic use in agriculture: what are the benefits and risks?
- (2014) Lisa M Durso et al. CURRENT OPINION IN MICROBIOLOGY
- Antibiotic resistance genes in bacterial and bacteriophage fractions of Tunisian and Spanish wastewaters as markers to compare the antibiotic resistance patterns in each population
- (2014) Marta Colomer-Lluch et al. ENVIRONMENT INTERNATIONAL
- Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
- (2014) Molly K Gibson et al. ISME Journal
- Effects of selective digestive decontamination (SDD) on the gut resistome
- (2014) Elena Buelow et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Exploring the Potential of Next-Generation Sequencing in Detection of Respiratory Viruses
- (2014) S. Prachayangprecha et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Metagenomic Analysis of Viruses in Feces from Unsolved Outbreaks of Gastroenteritis in Humans
- (2014) Nicole E. Moore et al. JOURNAL OF CLINICAL MICROBIOLOGY
- What is a resistance gene? Ranking risk in resistomes
- (2014) José L. Martínez et al. NATURE REVIEWS MICROBIOLOGY
- Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing
- (2014) Michael R. Wilson et al. NEW ENGLAND JOURNAL OF MEDICINE
- Identification of Aminoglycoside and β-Lactam Resistance Genes from within an Infant Gut Functional Metagenomic Library
- (2014) Fiona Fouhy et al. PLoS One
- Functional metagenomics for the investigation of antibiotic resistance
- (2014) Peter Mullany Virulence
- Bacteriophages as Vehicles for Antibiotic Resistance Genes in the Environment
- (2014) Jose Luis Balcazar PLoS Pathogens
- Culture-independent detection and characterisation ofMycobacterium tuberculosisandM. africanumin sputum samples using shotgun metagenomics on a benchtop sequencer
- (2014) Emma L. Doughty et al. PeerJ
- Antibiotic Resistance Genes in the Bacteriophage DNA Fraction of Human Fecal Samples
- (2013) Pablo Quirós et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- The Comprehensive Antibiotic Resistance Database
- (2013) Andrew G. McArthur et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
- (2013) Sushim Kumar Gupta et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Bacteriophages as a reservoir of extended-spectrum β -lactamase and fluoroquinolone resistance genes in the environment
- (2013) E. Marti et al. CLINICAL MICROBIOLOGY AND INFECTION
- Country-specific antibiotic use practices impact the human gut resistome
- (2013) K. Forslund et al. GENOME RESEARCH
- A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4
- (2013) Nicholas J. Loman et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples
- (2013) H. Hasman et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Antibiotic Resistance in Human Chronic Periodontitis Microbiota
- (2013) Thomas E. Rams et al. JOURNAL OF PERIODONTOLOGY
- Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
- (2013) Sheetal R. Modi et al. NATURE
- Pediatric Fecal Microbiota Harbor Diverse and Novel Antibiotic Resistance Genes
- (2013) Aimée M. Moore et al. PLoS One
- Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment
- (2013) Yuanqing Chao et al. Scientific Reports
- Carbapenemases in Klebsiella pneumoniae and Other Enterobacteriaceae: an Evolving Crisis of Global Dimensions
- (2012) L. S. Tzouvelekis et al. CLINICAL MICROBIOLOGY REVIEWS
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data
- (2012) Daniel R. Mende et al. PLoS One
- The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens
- (2012) K. J. Forsberg et al. SCIENCE
- A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa
- (2012) Gilda Grard et al. PLoS Pathogens
- Diversity and Abundance of Single-Stranded DNA Viruses in Human Feces
- (2011) Min-Soo Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Evaluation of short read metagenomic assembly
- (2011) Anveshi Charuvaka et al. BMC GENOMICS
- Insights into antibiotic resistance through metagenomic approaches
- (2011) Robert Schmieder et al. Future Microbiology
- The human gut virome: Inter-individual variation and dynamic response to diet
- (2011) S. Minot et al. GENOME RESEARCH
- Bacteriophages and diffusion of genes encoding antimicrobial resistance in cystic fibrosis sputum microbiota
- (2011) L. Fancello et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Antibiotics in Feed Induce Prophages in Swine Fecal Microbiomes
- (2011) H. K. Allen et al. mBio
- Functional Metagenomic Investigations of the Human Intestinal Microbiota
- (2011) Aimee M. Moore et al. Frontiers in Microbiology
- Identification of Diverse Antimicrobial Resistance Determinants Carried on Bacterial, Plasmid, or Viral Metagenomes from an Activated Sludge Microbial Assemblage
- (2010) L. C. Parsley et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Origins and Evolution of Antibiotic Resistance
- (2010) J. Davies et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Long-term impacts of antibiotic exposure on the human intestinal microbiota
- (2010) C. Jernberg et al. MICROBIOLOGY-SGM
- Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing
- (2010) G. Xie et al. Molecular Oral Microbiology
- The human microbiome harbors a diverse reservoir of antibiotic resistance genes
- (2010) Morten O.A. Sommer et al. Virulence
- Distribution of Tetracycline and Erythromycin Resistance Genes Among Human Oral and Fecal Metagenomic DNA
- (2009) Lorna A. Seville et al. Microbial Drug Resistance
- Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora
- (2009) M. O. A. Sommer et al. SCIENCE
- ARDB--Antibiotic Resistance Genes Database
- (2008) B. Liu et al. NUCLEIC ACIDS RESEARCH
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