Assessment of the Genetic Diversity and Population Structure of Rhizophora apiculata Blume (Rhizophoraceae) in Thailand

A chromosome‐scale reference genome assembly of yellow mangrove ( Bruguiera parviflora ) reveals a whole genome duplication event associated with the Rhizophoraceae lineage

(2022) Wirulda Pootakham et al.   Molecular Ecology Resources

Mangrove diversity is more than fringe deep

(2022) Steven W. J. Canty et al.   Scientific Reports

Genetic Diversity and Mating System of Two Mangrove Species (Rhizophora apiculata and Avicennia marina) in a Heavily Disturbed Area of China

(2022) Wenxun Lu et al.   Diversity-Basel

Chromosome‐level genome assembly of Indian mangrove ( Ceriops tagal ) revealed a genome‐wide duplication event predating the divergence of Rhizophoraceae mangrove species

(2022) Wirulda Pootakham et al.   Plant Genome

Evolution of coastal forests based on a full set of mangrove genomes

(2022) Ziwen He et al.   Nature Ecology & Evolution

De novo assemblies of Luffa acutangula and Luffa cylindrica genomes reveal an expansion associated with substantial accumulation of transposable elements

(2020) Wirulda Pootakham et al.   Molecular Ecology Resources

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Corrigendum: Direct determination of diploid genome sequences

(2018) Neil I. Weisenfeld et al.   GENOME RESEARCH

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

OUP accepted manuscript

(2018)   National Science Review

The state of the world’s mangroves in the 21st century under climate change

(2017) Ilka C. Feller et al.   HYDROBIOLOGIA

The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole genome sequencing

(2017) Shaohua Xu et al.   National Science Review

Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region

(2016) Zixiao Guo et al.   JOURNAL OF BIOGEOGRAPHY

Principal component analysis: a review and recent developments

(2016) Ian T. Jolliffe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Comparative Analysis of the Pattern of Population Genetic Diversity in Three Indo-West Pacific Rhizophora Mangrove Species

(2016) Yu-Bin Yan et al.   Frontiers in Plant Science

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Rates and drivers of mangrove deforestation in Southeast Asia, 2000–2012

(2015) Daniel R. Richards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mangrove root: adaptations and ecological importance

(2015) Sandhya Srikanth et al.   TREES-STRUCTURE AND FUNCTION

Applications of Multiple Nuclear Genes to the Molecular Phylogeny, Population Genetics and Hybrid Identification in the Mangrove Genus Rhizophora

(2015) Yongmei Chen et al.   PLoS One

Closely related and sympatric but not all the same: genetic variation of Indo-West Pacific Rhizophora mangroves across the Malay Peninsula

(2014) Wei Lun Ng et al.   CONSERVATION GENETICS

Ecological role and services of tropical mangrove ecosystems: a reassessment

(2014) Shing Yip Lee et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Genetic variation and population genetic structure of Rhizophora apiculata (Rhizophoraceae) in the greater Sunda Islands, Indonesia using microsatellite markers

(2013) Andi Fadly Yahya et al.   JOURNAL OF PLANT RESEARCH

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Anti-inflammatory and anti-tumor activity of the marine mangroveRhizophora apiculata

(2012) V. Vinod Prabhu et al.   Journal of Immunotoxicology

Mangrove stilt root morphology modeling for estimating hydraulic drag in tsunami inundation simulation

(2012) Wataru Ohira et al.   TREES-STRUCTURE AND FUNCTION

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Mangroves among the most carbon-rich forests in the tropics

(2011) Daniel C. Donato et al.   Nature Geoscience

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Levels and patterns of DNA variation in two sympatric mangrove species, Rhizophora apiculata and R. mucronata from Thailand

(2010) Nobuyuki Inomata et al.   GENES & GENETIC SYSTEMS

Status and distribution of mangrove forests of the world using earth observation satellite data

(2010) C. Giri et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

The Loss of Species: Mangrove Extinction Risk and Geographic Areas of Global Concern

(2010) Beth A. Polidoro et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Allometry, biomass, and productivity of mangrove forests: A review

(2008) Akira Komiyama et al.   AQUATIC BOTANY

Mangrove production and carbon sinks: A revision of global budget estimates

(2008) Steven Bouillon et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Antioxidant activities of mangrove Rhizophora apiculata bark extracts

(2007) Afidah A. Rahim et al.   FOOD CHEMISTRY