Chromosome‐level genome assembly of Indian mangrove ( Ceriops tagal ) revealed a genome‐wide duplication event predating the divergence of Rhizophoraceae mangrove species

De novo reference assembly of the upriver orange mangrove (Bruguiera sexangula) genome

(2022) Wirulda Pootakham et al.   Genome Biology and Evolution

A chromosome‐scale reference genome assembly of yellow mangrove ( Bruguiera parviflora ) reveals a whole genome duplication event associated with the Rhizophoraceae lineage

(2022) Wirulda Pootakham et al.   Molecular Ecology Resources

A de novo reference assembly of the yellow mangrove Ceriops zippeliana genome

(2022) Wirulda Pootakham et al.   G3-Genes Genomes Genetics

Assembly of a hybrid mangrove, Bruguiera hainesii, and its two ancestral contributors, Bruguiera cylindrica and Bruguiera gymnorhiza

(2022) Jeremy R. Shearman et al.   GENOMICS

Comparative Analysis and Phylogenetic Relationships of Ceriops Species (Rhizophoraceae) and Avicennia lanata (Acanthaceae): Insight into the Chloroplast Genome Evolution between Middle and Seaward Zones of Mangrove Forests

(2022) Panthita Ruang-areerate et al.   Biology-Basel

Chromosome‐level assembly of the mangrove plant Aegiceras corniculatum genome generated through Illumina, PacBio and Hi‐C sequencing technologies

(2021) Dongna Ma et al.   Molecular Ecology Resources

Genomic insights into molecular adaptation to intertidal environments in the mangrove Aegiceras corniculatum

(2021) Xiao Feng et al.   NEW PHYTOLOGIST

De novo genome assembly and in natura epigenomics reveal salinity‐induced DNA methylation in the mangrove tree Bruguiera gymnorhiza

(2021) Matin Miryeganeh et al.   NEW PHYTOLOGIST

A reference-grade genome identifies salt-tolerance genes from the salt-secreting mangrove species Avicennia marina

(2021) Purushothaman Natarajan et al.   Communications Biology

Convergent adaptation of the genomes of woody plants at the land-sea interface

(2020) Ziwen He et al.   National Science Review

Chromosome-scale assembly of the Kandelia obovata genome

(2020) Min-Jie Hu et al.   Horticulture Research

De novo assemblies of Luffa acutangula and Luffa cylindrica genomes reveal an expansion associated with substantial accumulation of transposable elements

(2020) Wirulda Pootakham et al.   Molecular Ecology Resources

A chromosome‐scale assembly of the black gram ( Vigna mungo ) genome

(2020) Wirulda Pootakham et al.   Molecular Ecology Resources

The complete chloroplast genome sequence of a medicinal mangrove tree Ceriops tagal and its phylogenetic analysis

(2019) Yukai Chen et al.   Mitochondrial DNA Part B-Resources

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

(2019) Diego Darriba et al.   MOLECULAR BIOLOGY AND EVOLUTION

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes

(2017) Haomin Lyu et al.   NEW PHYTOLOGIST

The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole genome sequencing

(2017) Shaohua Xu et al.   National Science Review

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

(2016) Nicholas H. Putnam et al.   GENOME RESEARCH

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

(2014) Evgenia V. Kriventseva et al.   NUCLEIC ACIDS RESEARCH

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

(2012) Z. Xi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Status and distribution of mangrove forests of the world using earth observation satellite data

(2010) C. Giri et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Draft genome sequence of the oilseed species Ricinus communis

(2010) Agnes P Chan et al.   NATURE BIOTECHNOLOGY

Salt tolerance mechanisms in mangroves: a review

(2010) Asish Kumar Parida et al.   TREES-STRUCTURE AND FUNCTION

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Transcriptome Profiling of the Mangrove PlantBruguiera gymnorhizaand Identification of Salt Tolerance Genes byAgrobacteriumFunctional Screening

(2009) Takuya YAMANAKA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes

(2008) Sandip Paul et al.   GENOME BIOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY