A Transcriptomic Analysis of Phenotypic Plasticity in Crassostrea virginica Larvae under Experimental Acidification

Analysing high-throughput sequencing data in Python with HTSeq 2.0

(2022) Givanna H Putri et al.   BIOINFORMATICS

Larval development in the Pacific oyster and the impacts of ocean acidification: Differential genetic effects in wild and domesticated stocks

(2021) Evan Durland et al.   Evolutionary Applications

Marine heatwaves have minimal influence on the quality of adult Sydney rock oyster flesh

(2021) Endurance E. Ewere et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Experimental acidification increases susceptibility of Mercenaria mercenaria to infection by Vibrio species

(2020) Caroline Schwaner et al.   MARINE ENVIRONMENTAL RESEARCH

Metabolomic and transcriptomic profiling reveals the alteration of energy metabolism in oyster larvae during initial shell formation and under experimental ocean acidification

(2020) Zhaoqun Liu et al.   Scientific Reports

Calcifiers can Adjust Shell Building at the Nanoscale to Resist Ocean Acidification

(2020) Jonathan Y. S. Leung et al.   Small

In Silico Analysis of Pacific Oyster (Crassostrea gigas) Transcriptome over Developmental Stages Reveals Candidate Genes for Larval Settlement

(2019) Valentin Foulon et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Adaptation to climate change through genetic accommodation and assimilation of plastic phenotypes

(2019) Morgan Kelly   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Expression of calcification‐related ion transporters during blue mussel larval development

(2019) Kirti Ramesh et al.   Ecology and Evolution

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

The Hyaluronidase, TMEM2, Promotes ER Homeostasis and Longevity Independent of the UPRER

(2019) Robert Thomas Schinzel et al.   CELL

Standing genetic variation fuels rapid adaptation to ocean acidification

(2019) M. C. Bitter et al.   Nature Communications

Proteomic response of gill microsomes of Crassostrea brasiliana exposed to diesel fuel water-accommodated fraction

(2018) Gabrielle do Amaral e Silva Müller et al.   AQUATIC TOXICOLOGY

Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

(2018) Pierre De Wit et al.   BMC GENOMICS

Ocean pH fluctuations affect mussel larvae at key developmental transitions

(2018) L. Kapsenberg et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ocean acidification and pathogen exposure modulate the immune response of the edible mussel Mytilus chilensis

(2017) Nicole Castillo et al.   FISH & SHELLFISH IMMUNOLOGY

A mammalian homolog of the zebrafish transmembrane protein 2 (TMEM2) is the long-sought-after cell-surface hyaluronidase

(2017) Hayato Yamamoto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transcriptomic profiling of adaptive responses to ocean acidification

(2017) Priscila Goncalves et al.   MOLECULAR ECOLOGY

Transcriptomic responses to seawater acidification among sea urchin populations inhabiting a natural pH mosaic

(2017) Tyler G. Evans et al.   MOLECULAR ECOLOGY

Gene expression stasis and plasticity following migration into a foreign environment

(2017) Brian K. Lohman et al.   MOLECULAR ECOLOGY

Oyster reproduction is compromised by acidification experienced seasonally in coastal regions

(2017) Myrina Boulais et al.   Scientific Reports

Ocean acidification affects parameters of immune response and extracellular pH in tropical sea urchins Lytechinus variegatus and Echinometra luccunter

(2016) Débora Alvares Leite Figueiredo et al.   AQUATIC TOXICOLOGY

Adaptation to climate change: trade-offs among responses to multiple stressors in an intertidal crustacean

(2016) Morgan W. Kelly et al.   Evolutionary Applications

Ocean acidification weakens the immune response of blood clam through hampering the NF-kappa β and toll-like receptor pathways

(2016) Saixi Liu et al.   FISH & SHELLFISH IMMUNOLOGY

Metabolic cost of calcification in bivalve larvae under experimental ocean acidification

(2016) Christina A. Frieder et al.   ICES JOURNAL OF MARINE SCIENCE

Non-additive effects of ocean acidification in combination with warming on the larval proteome of the Pacific oyster, Crassostrea gigas

(2016) Ewan Harney et al.   Journal of Proteomics

Wild populations of Sydney rock oysters differ in their proteomic responses to elevated carbon dioxide

(2016) E. L. Thompson et al.   MARINE AND FRESHWATER RESEARCH

In situdevelopmental responses of tropical sea urchin larvae to ocean acidification conditions at naturally elevatedpCO2vent sites

(2016) Miles D. Lamare et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular signatures of transgenerational response to ocean acidification in a species of reef fish

(2016) Celia Schunter et al.   Nature Climate Change

Food supply confers calcifiers resistance to ocean acidification

(2016) Laura Ramajo et al.   Scientific Reports

Selection on oxidative phosphorylation and ribosomal structure as a multigenerational response to ocean acidification in the common copepodPseudocalanus acuspes

(2015) Pierre De Wit et al.   Evolutionary Applications

Transgenerational effects alleviate severe fecundity loss during ocean acidification in a ubiquitous planktonic copepod

(2015) Peter Thor et al.   GLOBAL CHANGE BIOLOGY

Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature

(2015) Cameron K. Ghalambor et al.   NATURE

A transcriptomic analysis of the response of the arctic pteropod Limacina helicina to carbon dioxide-driven seawater acidification

(2015) Hye Yeon Koh et al.   POLAR BIOLOGY

Vulnerability and adaptation of US shellfisheries to ocean acidification

(2015) Julia A. Ekstrom et al.   Nature Climate Change

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia

(2014) Lev Y Yampolsky et al.   BMC GENOMICS

Coastal ocean acidification: The other eutrophication problem

(2014) Ryan B. Wallace et al.   ESTUARINE COASTAL AND SHELF SCIENCE

The Skeleton of the Staghorn Coral Acropora millepora: Molecular and Structural Characterization

(2014) Paula Ramos-Silva et al.   PLoS One

Saturation-state sensitivity of marine bivalve larvae to ocean acidification

(2014) George G. Waldbusser et al.   Nature Climate Change

Physiological response and resilience of early life-stage Eastern oysters (Crassostrea virginica) to past, present and future ocean acidification

(2014) C. J. Gobler et al.   Conservation Physiology

Interactive effects of elevated temperature and CO2 levels on energy metabolism and biomineralization of marine bivalves Crassostrea virginica and Mercenaria mercenaria

(2013) Anna V. Ivanina et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Ocean acidification and host-pathogen interactions: blue mussels,Mytilus edulis, encounteringVibrio tubiashii

(2013) Maria E. Asplund et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment

(2013) Tyler G. Evans et al.   MOLECULAR ECOLOGY

Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

(2013) Jochen B. W. Wolf   Molecular Ecology Resources

Adaptation and acclimatization to ocean acidification in marine ectotherms: an in situ transplant experiment with polychaetes at a shallow CO2 vent system

(2013) P. Calosi et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution in an acidifying ocean

(2013) Jennifer M. Sunday et al.   TRENDS IN ECOLOGY & EVOLUTION

DIFFERENCES IN THE REGULATION OF GROWTH AND BIOMINERALIZATION GENES REVEALED THROUGH LONG-TERM COMMON-GARDEN ACCLIMATION AND EXPERIMENTAL GENOMICS IN THE PURPLE SEA URCHIN

(2012) Melissa H. Pespeni et al.   EVOLUTION

Elevated pCO2 causes developmental delay in early larval Pacific oysters, Crassostrea gigas

(2012) Emma Timmins-Schiffman et al.   MARINE BIOLOGY

Impacts of seawater acidification on mantle gene expression patterns of the Baltic Sea blue mussel: implications for shell formation and energy metabolism

(2012) Anne K. Hüning et al.   MARINE BIOLOGY

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification

(2011) S. Martin et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Proteomic response to elevated PCO2 level in eastern oysters, Crassostrea virginica: evidence for oxidative stress

(2011) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Mitochondrial ATP synthase: architecture, function and pathology

(2011) An I. Jonckheere et al.   JOURNAL OF INHERITED METABOLIC DISEASE

The effects of elevated carbon dioxide concentrations on the metamorphosis, size, and survival of larval hard clams (Mercenaria mercenaria), bay scallops (Argopecten irradians), and Eastern oysters (Crassostrea virginica)

(2011) Stephanie C. Talmage et al.   LIMNOLOGY AND OCEANOGRAPHY

The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions

(2011) ROBERT W. CHAPMAN et al.   MOLECULAR ECOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Ocean Acidification at High Latitudes: Potential Effects on Functioning of the Antarctic Bivalve Laternula elliptica

(2011) Vonda Cummings et al.   PLoS One

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

(2011) S. U. Franssen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Carbonate constants for estuarine waters

(2010) Frank J. Millero   MARINE AND FRESHWATER RESEARCH

Elevated level of carbon dioxide affects metabolism and shell formation in oysters Crassostrea virginica (Gmelin)

(2010) E Beniash et al.   MARINE ECOLOGY PROGRESS SERIES

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Marine calcifiers exhibit mixed responses to CO2-induced ocean acidification

(2009) J. B. Ries et al.   GEOLOGY

Transcriptomic response of sea urchin larvae Strongylocentrotus purpuratus to CO2-driven seawater acidification

(2009) A. E. Todgham et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Shellfish Face Uncertain Future in High CO2 World: Influence of Acidification on Oyster Larvae Calcification and Growth in Estuaries

(2009) A. Whitman Miller et al.   PLoS One

Gene expression of ferritin in tissue of the Pacific white shrimp, Litopenaeus vannamei after exposure to pH stress

(2008) Jun Zhou et al.   AQUACULTURE

Effects of elevated pCO2 on early development in the mussel Mytilus galloprovincialis

(2008) H Kurihara et al.   Aquatic Biology

Using functional genomics to explore the effects of ocean acidification on calcifying marine organisms

(2008) GE Hofmann et al.   MARINE ECOLOGY PROGRESS SERIES

Ecosystem effects of ocean acidification in times of ocean warming: a physiologist’s view

(2008) H Pörtner   MARINE ECOLOGY PROGRESS SERIES

Ocean acidification may increase calcification rates, but at a cost

(2008) H. L Wood et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES