Stability criteria for the consumption and exchange of essential resources

Genomic structure predicts metabolite dynamics in microbial communities

(2022) Karna Gowda et al.   CELL

Ecology-guided prediction of cross-feeding interactions in the human gut microbiome

(2021) Akshit Goyal et al.   Nature Communications

From competition to facilitation and mutualism: a general theory of the niche

(2021) Thomas Koffel et al.   ECOLOGICAL MONOGRAPHS

Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments

(2021) Sylvie Estrela et al.   eLife

Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem

(2021) Jumpei F. Yamagishi et al.   PLoS Computational Biology

Cooperation and stability for complex systems in resource-limited environments

(2020) Stacey Butler et al.   Theoretical Ecology

The Minimum Environmental Perturbation Principle: A New Perspective on Niche Theory

(2020) Robert Marsland III et al.   AMERICAN NATURALIST

Dynamic metabolic adaptation can promote species coexistence in competitive microbial communities

(2020) Leonardo Pacciani-Mori et al.   PLoS Computational Biology

Effect of Resource Dynamics on Species Packing in Diverse Ecosystems

(2020) Wenping Cui et al.   PHYSICAL REVIEW LETTERS

Emergent neutrality in consumer-resource dynamics

(2020) Rafael D’Andrea et al.   PLoS Computational Biology

Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities

(2019) Robert Marsland et al.   PLoS Computational Biology

Microbial cross-feeding promotes multiple stable states and species coexistence, but also susceptibility to cheaters

(2019) Zepeng Sun et al.   JOURNAL OF THEORETICAL BIOLOGY

Engineered Interspecies Amino Acid Cross-Feeding Increases Population Evenness in a Synthetic Bacterial Consortium

(2019) Marika Ziesack et al.   mSystems

Evidence for a multi-level trophic organization of the human gut microbiome

(2019) Tong Wang et al.   PLoS Computational Biology

The feasibility and stability of large complex biological networks: a random matrix approach

(2018) Lewi Stone   Scientific Reports

Frequency-dependent feedback constrains plant community coexistence

(2018) Maarten B. Eppinga et al.   Nature Ecology & Evolution

Emergent simplicity in microbial community assembly

(2018) Joshua E. Goldford et al.   SCIENCE

Stability criteria for complex microbial communities

(2018) Stacey Butler et al.   Nature Communications

Beyond pairwise mechanisms of species coexistence in complex communities

(2017) Jonathan M. Levine et al.   NATURE

Collective Phase in Resource Competition in a Highly Diverse Ecosystem

(2017) Mikhail Tikhonov et al.   PHYSICAL REVIEW LETTERS

Metabolic Trade-Offs Promote Diversity in a Model Ecosystem

(2017) Anna Posfai et al.   PHYSICAL REVIEW LETTERS

Metabolic evolution and the self-organization of ecosystems

(2017) Rogier Braakman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions

(2017) Babak Momeni et al.   eLife

Overflow metabolism in Escherichia coli results from efficient proteome allocation

(2015) Markus Basan et al.   NATURE

The transition between the niche and neutral regimes in ecology

(2014) C. K. Fisher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bet-hedging during bacterial diauxic shift

(2014) A. Solopova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota

(2013) Richard R. Stein et al.   PLoS Computational Biology

Stability criteria for complex ecosystems

(2012) Stefano Allesina et al.   NATURE

Nutrient co-limitation of primary producer communities

(2011) W. Stanley Harpole et al.   ECOLOGY LETTERS

Some thoughts on the concept of colimitation: Three definitions and the importance of bioavailability

(2010) Mak A. Saito et al.   LIMNOLOGY AND OCEANOGRAPHY

Generalized Models Reveal Stabilizing Factors in Food Webs

(2009) T. Gross et al.   SCIENCE

Phytoplankton stoichiometry

(2008) C. A. Klausmeier et al.   ECOLOGICAL RESEARCH