Dynamic metabolic adaptation can promote species coexistence in competitive microbial communities

The Community Simulator: A Python package for microbial ecology

(2020) Robert Marsland et al.   PLoS One

Generalized size scaling of metabolic rates based on single-cell measurements with freshwater phytoplankton

(2019) Silvia Zaoli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chesson's coexistence theory

(2018) György Barabás et al.   ECOLOGICAL MONOGRAPHS

Statistical physics of community ecology: a cavity solution to MacArthur’s consumer resource model

(2018) Madhu Advani et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Trade-offs between microbial growth phases lead to frequency-dependent and non-transitive selection

(2018) Michael Manhart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Abundance determines the functional role of bacterial phylotypes in complex communities

(2018) Damian W. Rivett et al.   Nature Microbiology

Emergent simplicity in microbial community assembly

(2018) Joshua E. Goldford et al.   SCIENCE

Stability criteria for complex microbial communities

(2018) Stacey Butler et al.   Nature Communications

Higher-order interactions stabilize dynamics in competitive network models

(2017) Jacopo Grilli et al.   NATURE

Collective Phase in Resource Competition in a Highly Diverse Ecosystem

(2017) Mikhail Tikhonov et al.   PHYSICAL REVIEW LETTERS

Metabolic Trade-Offs Promote Diversity in a Model Ecosystem

(2017) Anna Posfai et al.   PHYSICAL REVIEW LETTERS

The multilayer nature of ecological networks

(2017) Shai Pilosof et al.   Nature Ecology & Evolution

Community structure follows simple assembly rules in microbial microcosms

(2017) Jonathan Friedman et al.   Nature Ecology & Evolution

High taxonomic variability despite stable functional structure across microbial communities

(2016) Stilianos Louca et al.   Nature Ecology & Evolution

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Inferring species interactions in ecological communities: a comparison of methods at different levels of complexity

(2015) Francesco Carrara et al.   Methods in Ecology and Evolution

Biodiversity and Ecosystem Functioning

(2014) David Tilman et al.   Annual Review of Ecology Evolution and Systematics

Bet-hedging during bacterial diauxic shift

(2014) A. Solopova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clustering in community structure across replicate ecosystems following a long-term bacterial evolution experiment

(2014) Hasan Celiker et al.   Nature Communications

Single-Cell Dynamics Reveals Sustained Growth during Diauxic Shifts

(2013) Sarah Boulineau et al.   PLoS One

Scaling body size fluctuations

(2013) A. Giometto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved use of a public good selects for the evolution of undifferentiated multicellularity

(2013) John H Koschwanez et al.   eLife

Adaptive foraging allows the maintenance of biodiversity of pollination networks

(2012) Fernanda S. Valdovinos et al.   OIKOS

Accelerating Markov Chain Monte Carlo Simulation by Differential Evolution with Self-Adaptive Randomized Subspace Sampling

(2011) J. A. Vrugt et al.   INTERNATIONAL JOURNAL OF NONLINEAR SCIENCES AND NUMERICAL SIMULATION

Fitness and its role in evolutionary genetics

(2009) H. Allen Orr   NATURE REVIEWS GENETICS

The mechanisms of carbon catabolite repression in bacteria

(2008) Josef Deutscher   CURRENT OPINION IN MICROBIOLOGY

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

(2008) Boris Görke et al.   NATURE REVIEWS MICROBIOLOGY