Widespread expression of the ancient HERV-K (HML-2) provirus group in normal human tissues

Human reproduction is regulated by retrotransposons derived from ancient Hominidae-specific viral infections

(2022) Xinyu Xiang et al.   Nature Communications

KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences

(2022) Alexandra Iouranova et al.   Mobile DNA

Species-specific KRAB-ZFPs function as repressors of retroviruses by targeting PBS regions

(2022) Bo Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human Endogenous Retrovirus as Therapeutic Targets in Neurologic Disease

(2021) Karen Giménez-Orenga et al.   Pharmaceuticals

Human Endogenous Retrovirus K in Cancer: A Potential Biomarker and Immunotherapeutic Target

(2020) Gislaine Curty et al.   Viruses-Basel

Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues

(2020) Camila M. Lopes-Ramos et al.   Cell Reports

The GTEx Consortium atlas of genetic regulatory effects across human tissues

(2020)   SCIENCE

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

(2019) Matthew L. Bendall et al.   PLoS Computational Biology

TFAP2C regulates transcription in human naive pluripotency by opening enhancers

(2018) William A. Pastor et al.   NATURE CELL BIOLOGY

The effects of death and post-mortem cold ischemia on human tissue transcriptomes

(2018) Pedro G. Ferreira et al.   Nature Communications

Promoter expression of HERV-K (HML-2) provirus-derived sequences is related to LTR sequence variation and polymorphic transcription factor binding sites

(2018) Meagan Montesion et al.   Retrovirology

Noncoding regions are the main source of targetable tumor-specific antigens

(2018) Céline M. Laumont et al.   Science Translational Medicine

Mechanisms of HERV-K (HML-2) Transcription during Human Mammary Epithelial Cell Transformation

(2017) Meagan Montesion et al.   JOURNAL OF VIROLOGY

HERV-K(HML-2), a seemingly silent subtenant - but still waters run deep

(2016) Kirsten Hanke et al.   APMIS

Discovery of unfixed endogenous retrovirus insertions in diverse human populations

(2016) Julia Halo Wildschutte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tracking interspecies transmission and long-term evolution of an ancient retrovirus using the genomes of modern mammals

(2016) William E Diehl et al.   eLife

The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses

(2015) Gernot Wolf et al.   GENES & DEVELOPMENT

Ancestral Mutations Acquired in Refrex-1, a Restriction Factor against Feline Retroviruses, during its Cooption and Domestication

(2015) Jumpei Ito et al.   JOURNAL OF VIROLOGY

Differential Expression of HERV-K (HML-2) Proviruses in Cells and Virions of the Teratocarcinoma Cell Line Tera-1

(2015) Neeru Bhardwaj et al.   Viruses-Basel

HERV-K(HML-2) rec and np9 transcripts not restricted to disease but present in many normal human tissues

(2015) Katja Schmitt et al.   Mobile DNA

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

(2014) Matthew T. Weirauch et al.   CELL

Endogenous Retroviruses and Human Cancer: Is There Anything to the Rumors?

(2014) Neeru Bhardwaj et al.   Cell Host & Microbe

Refrex-1, a Soluble Restriction Factor against Feline Endogenous and Exogenous Retroviruses

(2013) J. Ito et al.   JOURNAL OF VIROLOGY

Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation

(2013) C. Lavialle et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Endogenous retrovirus-K promoter: a landing strip for inflammatory transcription factors?

(2013) Mamneet Manghera et al.   Retrovirology

HERV-K(HML-2), the Best Preserved Family of HERVs: Endogenization, Expression, and Implications in Health and Disease

(2013) Oliver Hohn et al.   Frontiers in Oncology

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

From ancestral infectious retroviruses to bona fide cellular genes: Role of the captured syncytins in placentation

(2012) A. Dupressoir et al.   PLACENTA

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Expression of the Human Endogenous Retrovirus (HERV) Group HML-2/HERV-K Does Not Depend on Canonical Promoter Elements but Is Regulated by Transcription Factors Sp1 and Sp3

(2011) N. V. Fuchs et al.   JOURNAL OF VIROLOGY

Identification, characterization, and comparative genomic distribution of the HERV-K (HML-2) group of human endogenous retroviruses

(2011) Ravi P Subramanian et al.   Retrovirology

KAP1 controls endogenous retroviruses in embryonic stem cells

(2010) Helen M. Rowe et al.   NATURE

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

Integration target site selection by a resurrected human endogenous retrovirus

(2009) T. Brady et al.   GENES & DEVELOPMENT

Origin, antiviral function and evidence for positive selection of the gammaretrovirus restriction gene Fv1 in the genus Mus

(2009) Y. Yan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Retroviruses on Host Genome Function

(2008) Patric Jern et al.   Annual Review of Genetics

Endogenous retroviruses

(2008) K. Ruprecht et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

TEAD mediates YAP-dependent gene induction and growth control

(2008) B. Zhao et al.   GENES & DEVELOPMENT