Influences of carbon sources on N2O production during denitrification in freshwaters: Activity, isotopes and functional microbes

METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

(2022) Zhichao Zhou et al.   Microbiome

Increase of N2O production during nitrate reduction after long-term sulfide addition in lake sediment microcosms

(2021) Shengjie Li et al.   ENVIRONMENTAL POLLUTION

Diversity decoupled from sulfur isotope fractionation in a sulfate‐reducing microbial community

(2019) Jesse Colangelo‐Lillis et al.   Geobiology

Nitrous oxide and methane production from denitrifying woodchip bioreactors at three hydraulic residence times

(2019) Morgan P. Davis et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

(2019) Dongwan D. Kang et al.   PeerJ

Lakes as nitrous oxide sources in the boreal landscape

(2019) Pirkko Kortelainen et al.   GLOBAL CHANGE BIOLOGY

An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs

(2019) Xiaoli Dong et al.   Frontiers in Genetics

Enhancement of denitrification performance with reduction of nitrite accumulation and N2O emission by Shewanella oneidensis MR-1 in microbial denitrifying process

(2019) Meng Jiang et al.   WATER RESEARCH

Modeling nitrous oxide production by a denitrifying-enhanced biologically phosphorus removing (EBPR) activated sludge in the presence of different carbon sources and electron acceptors

(2018) K. Wisniewski et al.   WATER RESEARCH

Biokinetic Characterization and Activities of N2O-Reducing Bacteria in Response to Various Oxygen Levels

(2018) Toshikazu Suenaga et al.   Frontiers in Microbiology

Effects of carbon source, C/N ratio, nitrate, temperature, and pH on N2O emission and functional denitrifying genes during heterotrophic denitrification

(2018) Yun-Yeong Lee et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING

Emergent simplicity in microbial community assembly

(2018) Joshua E. Goldford et al.   SCIENCE

A dual nitrite isotopic investigation of chemodenitrification by mineral-associated Fe(II) and its production of nitrous oxide

(2017) Kalina C. Grabb et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Use of oxygen isotopes to differentiate between nitrous oxide produced by fungi or bacteria during denitrification

(2017) Lena Rohe et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Quantifying nitrous oxide production pathways in wastewater treatment systems using isotope technology – A critical review

(2017) Haoran Duan et al.   WATER RESEARCH

Evidence for fungal and chemodenitrification based N2O flux from nitrogen impacted coastal sediments

(2017) Scott D. Wankel et al.   Nature Communications

Parallelized, Aerobic, Single Carbon-Source Enrichments from Different Natural Environments Contain Divergent Microbial Communities

(2017) Theodore M. Flynn et al.   Frontiers in Microbiology

Constraining the role of iron in environmental nitrogen transformations: Dual stable isotope systematics of abiotic NO 2 − reduction by Fe(II) and its production of N 2 O

(2016) Carolyn Buchwald et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone

(2016) Stilianos Louca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic Analysis Indicates Epsilonproteobacteria as a Potential Cause of Microbial Corrosion in Pipelines Injected with Bisulfite

(2016) Dongshan An et al.   Frontiers in Microbiology

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Stable Isotopes and Iron Oxide Mineral Products as Markers of Chemodenitrification.

(2015) L. Camille Jones et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Isotopocule analysis of biologically produced nitrous oxide in various environments

(2015) Sakae Toyoda et al.   MASS SPECTROMETRY REVIEWS

Controls on nitrous oxide production and consumption in reservoirs of the Ohio River Basin

(2015) Jake J. Beaulieu et al.   Journal of Geophysical Research-Biogeosciences

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Dual isotope and isotopomer signatures of nitrous oxide from fungal denitrification - a pure culture study

(2014) Lena Rohe et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

High rates of denitrification and nitrous oxide emission in arid biological soil crusts from the Sultanate of Oman

(2013) Raeid M M Abed et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nitrous oxide emissions from soils: how well do we understand the processes and their controls?

(2013) K. Butterbach-Bahl et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Influence of natural and novel organic carbon sources on denitrification in forest, degraded urban, and restored streams

(2012) Tamara A. Newcomer et al.   ECOLOGICAL MONOGRAPHS

Carbon and hydrogen isotope fractionation during nitrite-dependent anaerobic methane oxidation by Methylomirabilis oxyfera

(2012) Olivia Rasigraf et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink

(2012) Christopher M Jones et al.   ISME Journal

Regulation of denitrification at the cellular level: a clue to the understanding of N2O emissions from soils

(2012) L. R. Bakken et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effect of pH on N2O reduction and accumulation during denitrification by methanol utilizing denitrifiers

(2012) Yuting Pan et al.   WATER RESEARCH

Denitrification potential in subsoils: A mechanism to reduce nitrate leaching to groundwater

(2011) M.M.R. Jahangir et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Isotopic Signature of N2O Produced by Marine Ammonia-Oxidizing Archaea

(2011) A. E. Santoro et al.   SCIENCE

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Different types of methane monooxygenases produce similar carbon and hydrogen isotope fractionation patterns during methane oxidation

(2010) Stefan Feisthauer et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil

(2010) LAURENT PHILIPPOT et al.   GLOBAL CHANGE BIOLOGY

Bacterial gene abundances as indicators of greenhouse gas emission in soils

(2010) Sergio E Morales et al.   ISME Journal

Nitrous oxide emission from denitrification in stream and river networks

(2010) J. J. Beaulieu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrogen in Agriculture: Balancing the Cost of an Essential Resource

(2009) G. Philip Robertson et al.   Annual Review of Environment and Resources

The contribution of manure and fertilizer nitrogen to atmospheric nitrous oxide since 1860

(2009) Eric A. Davidson   Nature Geoscience

Isotopologue enrichment factors of N2O reduction in soils

(2009) R. Well et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Effect of the carbon source on N2O emissions during biological denitrification

(2009) Nouceiba Adouani et al.   RESOURCES CONSERVATION AND RECYCLING

Nitrous Oxide (N2O): The Dominant Ozone-Depleting Substance Emitted in the 21st Century

(2009) A. R. Ravishankara et al.   SCIENCE

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

(2008) Mya Breitbart et al.   ENVIRONMENTAL MICROBIOLOGY

Out of reach

(2008) Sybil Seitzinger   NATURE

N2O emissions from agricultural lands: a synthesis of simulation approaches

(2008) Deli Chen et al.   PLANT AND SOIL

Isotopologue fractionation during N2O production by fungal denitrification

(2008) Robin L. Sutka et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology