PANOMICS at the interface of root–soil microbiome and BNI

L-theanine exuded from Camellia sinensis roots regulates element cycling in soil by shaping the rhizosphere microbiome assembly

(2022) Hengtong Xie et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Holo-omics for deciphering plant-microbiome interactions

(2021) Ling Xu et al.   Microbiome

Syringic acid from rice as a biological nitrification and urease inhibitor and its synergism with 1,9-decanediol

(2021) Yufang Lu et al.   BIOLOGY AND FERTILITY OF SOILS

BNI-release mechanisms in plant root systems: current status of understanding

(2021) Maoxing Zhang et al.   BIOLOGY AND FERTILITY OF SOILS

Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity

(2021) Arindam Ghatak et al.   BIOLOGY AND FERTILITY OF SOILS

Biological nitrification inhibition in maize—isolation and identification of hydrophobic inhibitors from root exudates

(2021) Junnosuke Otaka et al.   BIOLOGY AND FERTILITY OF SOILS

Effects of biological nitrification inhibitors on nitrogen use efficiency and greenhouse gas emissions in agricultural soils: A review

(2021) Xin Wang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Enlisting wild grass genes to combat nitrification in wheat farming: A nature-based solution

(2021) Guntur V. Subbarao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigating the Role of Root Exudates in Recruiting Streptomyces Bacteria to the Arabidopsis thaliana Microbiome

(2021) Sarah F. Worsley et al.   Frontiers in Molecular Biosciences

Stigmasterol root exudation arising from Pseudomonas inoculation of the duckweed rhizosphere enhances nitrogen removal from polluted waters

(2021) Yufang Lu et al.   ENVIRONMENTAL POLLUTION

Dissection of grasspea (Lathyrus sativus L.) root exoproteome reveals critical insights and novel proteins

(2021) Divya Rathi et al.   PLANT SCIENCE

PANOMICS meets germplasm

(2020) Wolfram Weckwerth et al.   PLANT BIOTECHNOLOGY JOURNAL

Microbiome-Mediated Stress Resistance in Plants

(2020) Hongwei Liu et al.   TRENDS IN PLANT SCIENCE

Biological nitrification inhibition in the rhizosphere: determining interactions and impact on microbially mediated processes and potential applications

(2020) Pierfrancesco Nardi et al.   FEMS MICROBIOLOGY REVIEWS

Root exudate composition of grass and forb species in natural grasslands

(2020) Sophie Dietz et al.   Scientific Reports

Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations

(2020) Ryan S. McClure et al.   Scientific Reports

Brachialactone isomers and derivatives of Brachiaria humidicola reveal contrasting nitrification inhibiting activity

(2020) Konrad Egenolf et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Rhizosphere pH and cation‐anion balance determine the exudation of nitrification inhibitor 3‐ epi ‐brachialactone suggesting release via secondary transport

(2020) Konrad Egenolf et al.   PHYSIOLOGIA PLANTARUM

Factors influencing the release of the biological nitrification inhibitor 1,9-decanediol from rice (Oryza sativa L.) roots

(2019) Xiaonan Zhang et al.   PLANT AND SOIL

A Route to Renewable Energy Triggered by the Haber-Bosch Process

(2019) Ying Wang et al.   Chem

Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli

(2019) Alberto Canarini et al.   Frontiers in Plant Science

A plant perspective on nitrogen cycling in the rhizosphere

(2019) Delphine Moreau et al.   FUNCTIONAL ECOLOGY

A specialized metabolic network selectively modulates Arabidopsis root microbiota

(2019) Ancheng C. Huang et al.   SCIENCE

Semi‐polar root exudates in natural grassland communities

(2019) Sophie Dietz et al.   Ecology and Evolution

The global tree restoration potential

(2019) Jean-Francois Bastin et al.   SCIENCE

Endophytic Fungus Drives Nodulation and N2 Fixation Attributable to Specific Root Exudates

(2019) Xing-Guang Xie et al.   mBio

Rhizosphere modelling reveals spatiotemporal distribution of daidzein shaping soybean rhizosphere bacterial community

(2019) Fuki Okutani et al.   PLANT CELL AND ENVIRONMENT

A Return to the Wild: Root Exudates and Food Security

(2019) Catherine Preece et al.   TRENDS IN PLANT SCIENCE

Plant-growth-promoting rhizobacteria Bacillus subtilis RR4 isolated from rice rhizosphere induces malic acid biosynthesis in rice roots

(2018) Kandaswamy Rekha et al.   CANADIAN JOURNAL OF MICROBIOLOGY

UPLC-HRMS-based untargeted metabolic profiling reveals changes in chickpea (Cicer arietinum ) metabolome following long-term drought stress

(2018) Naeem Khan et al.   PLANT CELL AND ENVIRONMENT

Metabolite profiling of shoot extract, root extract, and root exudate of rice under nitrogen and phosphorus deficiency

(2018) Keitaro Tawaraya et al.   SOIL SCIENCE AND PLANT NUTRITION

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

(2018) Lingfei Hu et al.   Nature Communications

Root exudate metabolomes change under drought and show limited capacity for recovery

(2018) Albert Gargallo-Garriga et al.   Scientific Reports

Changes in Root Exudates and Root Proteins in Groundnut–Pseudomonas sp. Interaction Contribute to Root Colonization by Bacteria and Defense Response of the Host

(2018) Sravani Ankati et al.   JOURNAL OF PLANT GROWTH REGULATION

Drought-Induced Accumulation of Root Exudates Supports Post-drought Recovery of Microbes in Mountain Grassland

(2018) Stefan Karlowsky et al.   Frontiers in Plant Science

Identification of Root-Secreted Compounds Involved in the Communication Between Cucumber, the Beneficial Bacillus amyloliquefaciens, and the Soil-Borne Pathogen Fusarium oxysporum

(2017) Yunpeng Liu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Small molecules below-ground: the role of specialized metabolites in the rhizosphere

(2017) Hassan Massalha et al.   PLANT JOURNAL

How Plant Root Exudates Shape the Nitrogen Cycle

(2017) Devrim Coskun et al.   TRENDS IN PLANT SCIENCE

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

Evolution of the Crop Rhizosphere: Impact of Domestication on Root Exudates in Tetraploid Wheat (Triticum turgidum L.)

(2017) Anna Iannucci et al.   Frontiers in Plant Science

Metabolic profiling of root exudates from two ecotypes of Sedum alfredii treated with Pb based on GC-MS

(2017) Qing Luo et al.   Scientific Reports

Metabolomes of Potato Root Exudates: Compounds That Stimulate Resting Spore Germination of the Soil-Borne Pathogen Spongospora subterranea

(2016) Mark A. Balendres et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Biological nitrification inhibition by rice root exudates and its relationship with nitrogen-use efficiency

(2016) Li Sun et al.   NEW PHYTOLOGIST

The Nitrification Inhibitor Methyl 3-(4-Hydroxyphenyl)Propionate Modulates Root Development by Interfering with Auxin Signaling via the NO/ROS Pathway

(2016) Yangyang Liu et al.   PLANT PHYSIOLOGY

Changes in rhizosphere bacterial gene expression following glyphosate treatment

(2016) Molli M. Newman et al.   SCIENCE OF THE TOTAL ENVIRONMENT

New Methods To Unravel Rhizosphere Processes

(2016) Eva Oburger et al.   TRENDS IN PLANT SCIENCE

Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication

(2016) Nicole M. van Dam et al.   TRENDS IN PLANT SCIENCE

TensorFlow: Biology’s Gateway to Deep Learning?

(2016) Ladislav Rampasek et al.   Cell Systems

Natural variation of root exudates in Arabidopsis thaliana-linking metabolomic and genomic data

(2016) Susann Mönchgesang et al.   Scientific Reports

Intraspecific variability in allelopathy of Heracleum mantegazzianum is linked to the metabolic profile of root exudates

(2015) Kateřina Jandová et al.   ANNALS OF BOTANY

Non-targeted profiling of semi-polar metabolites in Arabidopsis root exudates uncovers a role for coumarin secretion and lignification during the local response to phosphate limitation

(2015) Jörg Ziegler et al.   JOURNAL OF EXPERIMENTAL BOTANY

Modern plant metabolomics: advanced natural product gene discoveries, improved technologies, and future prospects

(2015) Lloyd W. Sumner et al.   NATURAL PRODUCT REPORTS

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

Deep learning

(2015) Yann LeCun et al.   NATURE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Jasmonoyl isoleucine accumulation is needed for abscisic acid build-up in roots of Arabidopsis under water stress conditions

(2015) Carlos de Ollas et al.   PLANT CELL AND ENVIRONMENT

Integrated Metabolomics and Transcriptomics Reveal Enhanced Specialized Metabolism inMedicago truncatulaRoot Border Cells

(2015) Bonnie S. Watson et al.   PLANT PHYSIOLOGY

Indirect nitrous oxide emissions from streams within the US Corn Belt scale with stream order

(2015) Peter A. Turner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Organic acids from root exudates of banana help root colonization of PGPR strain Bacillus amyloliquefaciens NJN-6

(2015) Jun Yuan et al.   Scientific Reports

Nitrogen signalling pathways shaping root system architecture: an update

(2014) Brian G Forde   CURRENT OPINION IN PLANT BIOLOGY

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

An interactive cluster heat map to visualize and explore multidimensional metabolomic data

(2014) Julijana Ivanisevic et al.   Metabolomics

A metabolomic approach to study the rhizodeposition in the tritrophic interaction: tomato, Pochonia chlamydosporia and Meloidogyne javanica

(2014) N. Escudero et al.   Metabolomics

Profiling of secondary metabolites in root exudates of Arabidopsis thaliana

(2014) Nadine Strehmel et al.   PHYTOCHEMISTRY

Biological nitrification inhibition in sorghum: the role of sorgoleone production

(2014) Tsehaye Tesfamariam et al.   PLANT AND SOIL

The importance of a sterile rhizosphere when phenotyping for root exudation

(2014) René C. P. Kuijken et al.   PLANT AND SOIL

Analysis of the Root System Architecture of Arabidopsis Provides a Quantitative Readout of Crosstalk between Nutritional Signals

(2014) F. Kellermeier et al.   PLANT CELL

mzGroupAnalyzer-Predicting Pathways and Novel Chemical Structures from Untargeted High-Throughput Metabolomics Data

(2014) Hannes Doerfler et al.   PLoS One

Metabolite profiling of soybean root exudates under phosphorus deficiency

(2014) Keitaro Tawaraya et al.   SOIL SCIENCE AND PLANT NUTRITION

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Root Exudates of Rice Cultivars Affect Rhizospheric Phosphorus Dynamics in Soils with Different Phosphorus Statuses

(2013) P. Bhattacharyya et al.   COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS

Application of Natural Blends of Phytochemicals Derived from the Root Exudates ofArabidopsisto the Soil Reveal That Phenolic-related Compounds Predominantly Modulate the Soil Microbiome

(2013) Dayakar V. Badri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

METABOLITE PROFILING OF SHOOT EXTRACTS, ROOT EXTRACTS, AND ROOT EXUDATES OF RICE PLANT UNDER PHOSPHORUS DEFICIENCY

(2013) Keitaro Tawaraya et al.   JOURNAL OF PLANT NUTRITION

Synthesis and modeling perspectives of rhizosphere priming

(2013) Weixin Cheng et al.   NEW PHYTOLOGIST

The global nitrogen cycle in the twenty-first century

(2013) D. Fowler et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nitrogen acquisition by roots: physiological and developmental mechanisms ensuring plant adaptation to a fluctuating resource

(2013) Philippe Nacry et al.   PLANT AND SOIL

Phytochemical analysis of mature tree root exudates in situ and their role in shaping soil microbial communities in relation to tree N-acquisition strategy

(2013) Serge Michalet et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Stimulation of nitrogen removal in the rhizosphere of aquatic duckweed by root exudate components

(2013) Yufang Lu et al.   PLANTA

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root exudates: the hidden part of plant defense

(2013) Ulrike Baetz et al.   TRENDS IN PLANT SCIENCE

Application of selected reaction monitoring mass spectrometry to field-grown crop plants to allow dissection of the molecular mechanisms of abiotic stress tolerance

(2013) Richard P. Jacoby et al.   Frontiers in Plant Science

Climate Change and Food Systems

(2012) Sonja J. Vermeulen et al.   Annual Review of Environment and Resources

Systemic modification of cotton root exudates induced by arbuscular mycorrhizal fungi and Bacillus vallismortis HJ-5 and their effects on Verticillium wilt disease

(2012) Guoyi Zhang et al.   APPLIED SOIL ECOLOGY

Evaluation of a novel tool for sampling root exudates from soil-grown plants compared to conventional techniques

(2012) Eva Oburger et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

A biomolecular isolation framework for eco-systems biology

(2012) Hugo Roume et al.   ISME Journal

COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data

(2012) Xiaoliang Sun et al.   Metabolomics

Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform

(2012) Angela Mari et al.   Metabolomics

Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism

(2012) Hannes Doerfler et al.   Metabolomics

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Effect of methyl 3-4-hydroxyphenyl propionate, a Sorghum root exudate, on N dynamic, potential nitrification activity and abundance of ammonia-oxidizing bacteria and archaea

(2012) Pierfrancesco Nardi et al.   PLANT AND SOIL

Biological nitrification inhibition (BNI) activity in sorghum and its characterization

(2012) G. V. Subbarao et al.   PLANT AND SOIL

Metabolomics reveals herbivore-induced metabolites of resistance and susceptibility in maize leaves and roots

(2012) GUILLAUME MARTI et al.   PLANT CELL AND ENVIRONMENT

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing

(2011) Wolfram Weckwerth   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Citramalic acid and salicylic acid in sugar beet root exudates solubilize soil phosphorus

(2011) Reza Khorassani et al.   BMC PLANT BIOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Green systems biology — From single genomes, proteomes and metabolomes to ecosystems research and biotechnology

(2011) Wolfram Weckwerth   Journal of Proteomics

Root Secretion of Defense-related Proteins Is Development-dependent and Correlated with Flowering Time

(2010) Clelia De-la-Peña et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization of Metaproteomics in Crop Rhizospheric Soil

(2010) Hai-Bin Wang et al.   JOURNAL OF PROTEOME RESEARCH

Metabolomics: an integral technique in systems biology

(2010) Wolfram Weckwerth   Bioanalysis

Effect of the presence of the plant growth promoting rhizobacterium (PGPR) Chryseobacterium balustinum Aur9 and salt stress in the pattern of flavonoids exuded by soybean roots

(2009) Marta S. Dardanelli et al.   PLANT AND SOIL

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

On the fate of anthropogenic nitrogen

(2009) W. H. Schlesinger   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for biological nitrification inhibition in Brachiaria pastures

(2009) G. V. Subbarao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrous Oxide (N2O): The Dominant Ozone-Depleting Substance Emitted in the 21st Century

(2009) A. R. Ravishankara et al.   SCIENCE

Gas chromatography–mass spectrometry associated global analysis of rice root exudates under aseptical conditions

(2009) Katsumasa Suzuki et al.   SOIL SCIENCE AND PLANT NUTRITION

Detection, isolation and characterization of a root-exuded compound, methyl 3-(4-hydroxyphenyl) propionate, responsible for biological nitrification inhibition by sorghum (Sorghum bicolor)

(2008) Hossain A. K. M. Zakir et al.   NEW PHYTOLOGIST

Free fatty acids from the pasture grass Brachiaria humidicola and one of their methyl esters as inhibitors of nitrification

(2008) G. V. Subbarao et al.   PLANT AND SOIL

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE