Electric fields control water-gated proton transfer in cytochrome c oxidase
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Electric fields control water-gated proton transfer in cytochrome
c
oxidase
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 119, Issue 38, Pages -
Publisher
Proceedings of the National Academy of Sciences
Online
2022-09-13
DOI
10.1073/pnas.2207761119
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Structural basis for safe and efficient energy conversion in a respiratory supercomplex
- (2022) Wei-Chun Kao et al. Nature Communications
- Molecular Principles of Redox-Coupled Protonation Dynamics in Photosystem II
- (2022) Friederike Allgöwer et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments
- (2022) Jared Bryce Weaver et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Architecture of bacterial respiratory chains
- (2021) Ville R. I. Kaila et al. NATURE REVIEWS MICROBIOLOGY
- Quantification of Local Electric Field Changes at the Active Site of Cytochrome c Oxidase by Fourier Transform Infrared Spectroelectrochemical Titrations
- (2021) Federico Baserga et al. Frontiers in Chemistry
- Beating Heart of Cytochrome c Oxidase: The Shared Proton of Heme a3 Propionates
- (2021) Jovan Dragelj et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Electric Fields in Catalysis: From Enzymes to Molecular Catalysts
- (2021) Nadia G. Léonard et al. ACS Catalysis
- Resolving Chemical Dynamics in Biological Energy Conversion: Long-Range Proton-Coupled Electron Transfer in Respiratory Complex I
- (2021) Ville R. I. Kaila ACCOUNTS OF CHEMICAL RESEARCH
- Cryo-EM structures of intermediates suggest an alternative catalytic reaction cycle for cytochrome c oxidase
- (2021) F. Kolbe et al. Nature Communications
- TURBOMOLE: Modular program suite for ab initio quantum-chemical and condensed-matter simulations
- (2020) Sree Ganesh Balasubramani et al. JOURNAL OF CHEMICAL PHYSICS
- Scalable molecular dynamics on CPU and GPU architectures with NAMD
- (2020) James C. Phillips et al. JOURNAL OF CHEMICAL PHYSICS
- Identifying the proton loading site cluster in the ba cytochrome c oxidase that loads and traps protons
- (2020) Xiuhong Cai et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase
- (2019) Izumi Ishigami et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Network analysis of a proposed exit pathway for protons to the P-side of cytochrome c oxidase
- (2018) Xiuhong Cai et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Oxygen Activation and Energy Conservation by Cytochrome c Oxidase
- (2018) Mårten Wikström et al. CHEMICAL REVIEWS
- Long-range proton-coupled electron transfer in biological energy conversion: towards mechanistic understanding of respiratory complex I
- (2018) Ville R. I. Kaila Journal of the Royal Society Interface
- Dewetting transitions coupled to K-channel activation in cytochrome c oxidase
- (2018) Shreyas Supekar et al. Chemical Science
- A Protonated Water Cluster as a Transient Proton-Loading Site in Cytochrome cOxidase
- (2016) Shreyas Supekar et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Mechanism of Oxygen Reduction in Cytochrome c Oxidase and the Role of the Active Site Tyrosine
- (2016) Margareta R. A. Blomberg BIOCHEMISTRY
- Water exit pathways and proton pumping mechanism in B-type cytochrome c oxidase from molecular dynamics simulations
- (2016) Longhua Yang et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Complex structure of cytochrome c –cytochrome c oxidase reveals a novel protein–protein interaction mode
- (2016) Satoru Shimada et al. EMBO JOURNAL
- Monte Carlo Simulations of Glu-242 in Cytochrome c Oxidase
- (2016) Benjamin M. Samudio et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Multiscale simulations reveal key features of the proton-pumping mechanism in cytochromecoxidase
- (2016) Ruibin Liang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Measuring Electric Fields and Noncovalent Interactions Using the Vibrational Stark Effect
- (2015) Stephen D. Fried et al. ACCOUNTS OF CHEMICAL RESEARCH
- New Perspectives on Proton Pumping in Cellular Respiration
- (2015) Mårten Wikström et al. CHEMICAL REVIEWS
- Proton-coupled electron transfer and the role of water molecules in proton pumping by cytochromecoxidase
- (2015) Vivek Sharma et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microscopic basis for kinetic gating in cytochrome c oxidase: insights from QM/MM analysis
- (2015) Puja Goyal et al. Chemical Science
- The CHARMM-TURBOMOLE interface for efficient and accurate QM/MM molecular dynamics, free energies, and excited state properties
- (2014) Saleh Riahi et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Characterizing the proton loading site in cytochrome c oxidase
- (2014) J. Lu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exploring the Possible Role of Glu286 in CcO by Electrostatic Energy Computations Combined with Molecular Dynamics
- (2013) Anna Lena Woelke et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Computational study of the activated OH state in the catalytic mechanism of cytochrome c oxidase
- (2013) V. Sharma et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Changing hydration level in an internal cavity modulates the proton affinity of a key glutamate in cytochrome c oxidase
- (2013) P. Goyal et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
- (2012) Robert B. Best et al. Journal of Chemical Theory and Computation
- Mechanistic stoichiometry of proton translocation by cytochrome cbb3
- (2012) V. Rauhamaki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The mechanism for proton pumping in cytochrome c oxidase from an electrostatic and quantum chemical perspective
- (2011) Margareta R.A. Blomberg et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Dynamic water networks in cytochrome cbb3 oxidase
- (2011) Vivek Sharma et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Insights into the Mechanism of Proton Transport in Cytochrome c Oxidase
- (2011) Takefumi Yamashita et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Entrance of the proton pathway in cbb3-type heme-copper oxidases
- (2011) H. J. Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The identity of the transient proton loading site of the proton-pumping mechanism of cytochrome c oxidase
- (2010) Ville R.I. Kaila et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Proton-Coupled Electron Transfer in Cytochrome Oxidase
- (2010) Ville R. I. Kaila et al. CHEMICAL REVIEWS
- The Structure of cbb3 Cytochrome Oxidase Provides Insights into Proton Pumping
- (2010) S. Buschmann et al. SCIENCE
- Microscopic pKaAnalysis of Glu286 in CytochromecOxidase (Rhodobacter sphaeroides): Toward a Calibrated Molecular Model†
- (2009) Nilanjan Ghosh et al. BIOCHEMISTRY
- The chemistry of the CuB site in cytochrome c oxidase and the importance of its unique His–Tyr bond
- (2009) Ville R.I. Kaila et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Mechanism and energetics by which glutamic acid 242 prevents leaks in cytochrome c oxidase
- (2009) Ville R.I. Kaila et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- CHARMM: The biomolecular simulation program
- (2009) B. R. Brooks et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Charge Transfer in the K Proton Pathway Linked to Electron Transfer to the Catalytic Site in CytochromecOxidase
- (2008) Håkan Lepp et al. BIOCHEMISTRY
- Electrostatic control of proton pumping in cytochrome c oxidase
- (2008) Elisa Fadda et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Glutamic acid 242 is a valve in the proton pump of cytochrome c oxidase
- (2008) V. R. I. Kaila et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Electrostatic basis for the unidirectionality of the primary proton transfer in cytochrome c oxidase
- (2008) A. V. Pisliakov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Charge parameterization of the metal centers in cytochromecoxidase
- (2007) Mikael P. Johansson et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started