Cryo-EM structures of intermediates suggest an alternative catalytic reaction cycle for cytochrome c oxidase

Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1

(2020) Jasenko Zivanov et al.   IUCrJ

Improvement of cryo-EM maps by density modification

(2020) Thomas C. Terwilliger et al.   NATURE METHODS

Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase

(2019) Izumi Ishigami et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)

(2018) Lukáš Pravda et al.   NUCLEIC ACIDS RESEARCH

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

(2017) Thomas D. Goddard et al.   PROTEIN SCIENCE

Serial femtosecond crystallography structure of cytochrome c oxidase at room temperature

(2017) Rebecka Andersson et al.   Scientific Reports

Splitting of the O–O bond at the heme-copper catalytic site of respiratory oxidases

(2017) Federica Poiana et al.   Science Advances

Reaction Mechanism of Cytochrome c Oxidase

(2015) Shinya Yoshikawa et al.   CHEMICAL REVIEWS

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

The Protein Effect in the Structure of Two Ferryl-Oxo Intermediates at the Same Oxidation Level in the Heme Copper Binuclear Center of CytochromecOxidase

(2013) Eftychia Pinakoulaki et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

True wild type and recombinant wild type cytochrome c oxidase from Paracoccus denitrificans show a 20-fold difference in their catalase activity

(2012) Florian Hilbers et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

A combined quantum chemical and crystallographic study on the oxidized binuclear center of cytochrome c oxidase

(2011) Ville R.I. Kaila et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

High Resolution Structure of the ba3 Cytochrome c Oxidase from Thermus thermophilus in a Lipidic Environment

(2011) Theresa Tiefenbrunn et al.   PLoS One

Interconversions of P and F intermediates of cytochrome c oxidase from Paracoccus denitrificans

(2011) I. von der Hocht et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Nature of the Ferryl Heme in Compounds I and II

(2010) Andrea Gumiero et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: New insights into the active site and the proton transfer pathways

(2009) Juergen Koepke et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Electron transfer and energy transduction in the terminal part of the respiratory chain — Lessons from bacterial model systems

(2009) Oliver-Matthias H. Richter et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump

(2009) H. Aoyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crystallographic Studies of Xe and Kr Binding within the Large Internal Cavity of Cytochromeba3fromThermus thermophilus: Structural Analysis and Role of Oxygen Transport Channels in the Heme−Cu Oxidases†,‡

(2008) V. Mitch Luna et al.   BIOCHEMISTRY