The vacuolar H+/Ca transporter CAX1 participates in submergence and anoxia stress responses

Cation transporters in cell fate determination and plant adaptive responses to a low-oxygen environment

(2021) Xin Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Ratiometric Calcium Reporter CGf Reveals Calcium Dynamics Both in the Single Cell and Whole Plant Levels Under Heat Stress

(2021) Chrystle Weigand et al.   Frontiers in Plant Science

RNA-Seq reveals novel genes and pathways associated with hypoxia duration and tolerance in tomato root

(2020) Vajiheh Safavi-Rizi et al.   Scientific Reports

Decreased Vacuolar Ca2+ Storage and Disrupted Vesicle Trafficking Underlie Alpha-Synuclein-Induced Ca2+ Dysregulation in S. cerevisiae

(2020) Geert Callewaert et al.   Frontiers in Genetics

Tonoplast-localized Ca2+pumps regulate Ca2+signals during pattern-triggered immunity inArabidopsis thaliana

(2020) Richard Hilleary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Sense: The Rise of Calcium Channels

(2020) Xiangpei Kong et al.   TRENDS IN PLANT SCIENCE

Arabidopsis phenotyping reveals the importance of alcohol dehydrogenase and pyruvate decarboxylase for aerobic plant growth

(2020) Irene Ventura et al.   Scientific Reports

A curated list of genes that affect the plant ionome

(2020) Lauren Whitt et al.   Plant Direct

RBOH-Dependent ROS Synthesis and ROS Scavenging by Plant Specialized Metabolites To Modulate Plant Development and Stress Responses

(2019) Jordan M. Chapman et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Whole-Plant Live Imaging of Reactive Oxygen Species

(2019) Yosef Fichman et al.   Molecular Plant

Elevation of cytosolic Ca 2+ in response to energy deficiency in plants: the general mechanism of adaptation to low oxygen stress

(2018) Abir U. Igamberdiev et al.   BIOCHEMICAL JOURNAL

The contribution of organelles to plant intracellular calcium signalling

(2018) Alex Costa et al.   JOURNAL OF EXPERIMENTAL BOTANY

Calcium transport across plant membranes: mechanisms and functions

(2018) Vadim Demidchik et al.   NEW PHYTOLOGIST

A stress recovery signaling network for enhanced flooding tolerance inArabidopsis thaliana

(2018) Elaine Yeung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Glutamate triggers long-distance, calcium-based plant defense signaling

(2018) Masatsugu Toyota et al.   SCIENCE

Flooding and low oxygen responses in plants

(2017) Ole Pedersen et al.   FUNCTIONAL PLANT BIOLOGY

Heterodimerization of Arabidopsis calcium/proton exchangers contributes to regulation of guard cell dynamics and plant defense responses

(2017) Bradleigh Hocking et al.   JOURNAL OF EXPERIMENTAL BOTANY

Orchestrating rapid long-distance signaling in plants with Ca2+ , ROS and electrical signals

(2017) Won-Gyu Choi et al.   PLANT JOURNAL

A nondestructive method to estimate the chlorophyll content of Arabidopsis seedlings

(2017) Ying Liang et al.   Plant Methods

Gene Regulation and Survival under Hypoxia Requires Starch Availability and Metabolism

(2017) Elena Loreti et al.   PLANT PHYSIOLOGY

Signal Dynamics and Interactions during Flooding Stress

(2017) Rashmi Sasidharan et al.   PLANT PHYSIOLOGY

Oxygen Sensing and Integrative Stress Signaling in Plants

(2017) Romy R. Schmidt et al.   PLANT PHYSIOLOGY

Plant responses to flooding stress

(2016) Elena Loreti et al.   CURRENT OPINION IN PLANT BIOLOGY

Tissue-specific root ion profiling reveals essential roles of the CAX and ACA calcium transport systems in response to hypoxia in Arabidopsis

(2016) Feifei Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

CAX-ing a wide net: Cation/H+ transporters in metal remediation and abiotic stress signalling

(2016) J. K. Pittman et al.   PLANT BIOLOGY

Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia

(2016) Melanie Verena Paul et al.   PLANT PHYSIOLOGY

When Bad Guys Become Good Ones: The Key Role of Reactive Oxygen Species and Nitric Oxide in the Plant Responses to Abiotic Stress

(2016) Fernanda S. Farnese et al.   Frontiers in Plant Science

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Flooding stress signaling through perturbations in oxygen, ethylene, nitric oxide and light

(2015) Laurentius A. C. J. Voesenek et al.   NEW PHYTOLOGIST

Analyses of Ca2+dynamics using a ubiquitin-10 promoter-driven Yellow Cameleon 3.6 indicator reveal reliable transgene expression and differences in cytoplasmic Ca2+responses in Arabidopsis and rice (Oryza sativa) roots

(2015) Smrutisanjita Behera et al.   NEW PHYTOLOGIST

Redundant ERF-VII transcription factors bind an evolutionarily-conserved cis-motif to regulate hypoxia-responsive gene expression in Arabidopsis

(2015) Philipp Gasch et al.   PLANT CELL

Job Sharing in the Endomembrane System: Vacuolar Acidification Requires the Combined Activity of V-ATPase and V-PPase

(2015) Anne Kriegel et al.   PLANT CELL

pH Regulation by NHX-Type Antiporters Is Required for Receptor-Mediated Protein Trafficking to the Vacuole in Arabidopsis

(2015) Maria Reguera et al.   PLANT CELL

Arabidopsis CML38, a Calcium Sensor That Localizes to Ribonucleoprotein Complexes under Hypoxia Stress

(2015) Ansul Lokdarshi et al.   PLANT PHYSIOLOGY

Group VII Ethylene Response Factors Coordinate Oxygen and Nitric Oxide Signal Transduction and Stress Responses in Plants

(2015) Daniel J. Gibbs et al.   PLANT PHYSIOLOGY

CATION EXCHANGER1Cosegregates with Cadmium Tolerance in the Metal HyperaccumulatorArabidopsis halleriand Plays a Role in Limiting Oxidative Stress inArabidopsisSpp.

(2015) Cecilia Baliardini et al.   PLANT PHYSIOLOGY

Efficient use of energy in anoxia-tolerant plants with focus on germinating rice seedlings

(2014) Brian J. Atwell et al.   NEW PHYTOLOGIST

A Shoot-Specific Hypoxic Response of Arabidopsis Sheds Light on the Role of the Phosphate-Responsive Transcription Factor PHOSPHATE STARVATION RESPONSE1

(2014) M. Klecker et al.   PLANT PHYSIOLOGY

Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway

(2014) Daan A. Weits et al.   Nature Communications

Flooding tolerance: O2 sensing and survival strategies

(2013) LACJ Voesenek et al.   CURRENT OPINION IN PLANT BIOLOGY

Low Oxygen Response Mechanisms in Green Organisms

(2013) Valeria Banti et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Plant cation/H+ exchangers (CAXs): biological functions and genetic manipulations

(2011) M. Manohar et al.   PLANT BIOLOGY

Cell-Specific Vacuolar Calcium Storage Mediated byCAX1Regulates Apoplastic Calcium Concentration, Gas Exchange, and Plant Productivity inArabidopsis

(2011) Simon J. Conn et al.   PLANT CELL

Hypoxia-Inducible Genes Encoding Small EF-Hand Proteins in Rice and Tomato

(2010) Chie OTSUKA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Dual trypan-aniline blue fluorescence staining methods for studying fungus-plant interactions

(2010) V Bhadauria et al.   BIOTECHNIC & HISTOCHEMISTRY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Scaffold: A bioinformatic tool for validating MS/MS-based proteomic studies

(2010) Brian C. Searle   PROTEOMICS

Quantitative Proteomics of the Tonoplast Reveals a Role for Glycolytic Enzymes in Salt Tolerance

(2009) B. J. Barkla et al.   PLANT CELL

Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis

(2009) A. Mustroph et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Does anoxia tolerance involve altering the energy currency towards PPi?

(2008) Shaobai Huang et al.   TRENDS IN PLANT SCIENCE