Genome-wide analysis reveals selection signatures for body size and drought adaptation in Liangzhou donkey

Assessing genomic diversity and signatures of selection in Jiaxian Red cattle using whole-genome sequencing data

(2021) Xiaoting Xia et al.   BMC GENOMICS

Genomic analyses reveal distinct genetic architectures and selective pressures in Chinese donkeys

(2021) Jiafei Shen et al.   Journal of Genetics and Genomics

Whole-genome resequencing reveals diversity, global and local ancestry proportions in Yunling cattle

(2020) Qiuming Chen et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Donkey genomes provide new insights into domestication and selection for coat color

(2020) Changfa Wang et al.   Nature Communications

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

(2018) Chi Zhang et al.   BIOINFORMATICS

Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments

(2016) Ji Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiple genomic signatures of selection in goats and sheep indigenous to a hot arid environment

(2015) E-S Kim et al.   HEREDITY

Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

(2015) Pablo Librado et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inbreeding and runs of homozygosity: A possible solution to an old problem

(2014) Ino Curik et al.   Livestock Science

selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection

(2014) Z. A. Szpiech et al.   MOLECULAR BIOLOGY AND EVOLUTION

Camelid genomes reveal evolution and adaptation to desert environments

(2014) Huiguang Wu et al.   Nature Communications

Measuring inbreeding and inbreeding depression on pig growth from pedigree or SNP-derived metrics

(2013) L. Silió et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Multiethnic Replication Study of Plasma Lipoprotein Levels-Associated SNPs Identified in Recent GWAS

(2013) Emily K. Bryant et al.   PLoS One

Runs of homozygosity and population history in cattle

(2012) Deirdre C Purfield et al.   BMC GENETICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Strong signatures of selection in the domestic pig genome

(2012) C.-J. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome sequences of wild and domestic bactrian camels

(2012)   Nature Communications

The SNP c.1326T>G in the non-SMC condensin I complex, subunit G (NCAPG) gene encoding a p.Ile442Met variant is associated with an increase in body frame size at puberty in cattle

(2011) K. Setoguchi et al.   ANIMAL GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci

(2010) Yukinori Okada et al.   HUMAN MOLECULAR GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genome-wide association study of growth in crossbred beef cattle12

(2009) W. M. Snelling et al.   JOURNAL OF ANIMAL SCIENCE

Many sequence variants affecting diversity of adult human height

(2008) Daniel F Gudbjartsson et al.   NATURE GENETICS