Proteogenomics and Differential Ion Mobility Enable the Exploration of the Mutational Landscape in Colon Cancer Cells

High-Throughput Microbore Ultrahigh-Performance Liquid Chromatography-Ion Mobility-Enabled-Mass Spectrometry-Based Proteomics Methodology for the Exploratory Analysis of Serum Samples from Large Cohort Studies

(2021) Sarah Lennon et al.   JOURNAL OF PROTEOME RESEARCH

Development of comprehensive two-dimensional low-flow liquid-chromatography setup coupled to high-resolution mass spectrometry for shotgun proteomics

(2021) Liana S. Roca et al.   ANALYTICA CHIMICA ACTA

Identification of 7 000–9 000 Proteins from Cell Lines and Tissues by Single-Shot Microflow LC–MS/MS

(2021) Yangyang Bian et al.   ANALYTICAL CHEMISTRY

Integration of Segmented Ion Fractionation and Differential Ion Mobility on a Q-Exactive Hybrid Quadrupole Orbitrap Mass Spectrometer

(2021) Sibylle Pfammatter et al.   ANALYTICAL CHEMISTRY

Mass spectrometry‐based targeted proteomics for analysis of protein mutations

(2021) Tai‐Tu Lin et al.   MASS SPECTROMETRY REVIEWS

A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients

(2020) Dorte B. Bekker-Jensen et al.   MOLECULAR & CELLULAR PROTEOMICS

MaxQuant.Live enables global targeting of more than 25,000 peptides

(2019) Christoph Wichmann et al.   MOLECULAR & CELLULAR PROTEOMICS

MS1 ion current‐based quantitative proteomics: A promising solution for reliable analysis of large biological cohorts

(2019) Xue Wang et al.   MASS SPECTROMETRY REVIEWS

Optimized Workflow for Multiplexed Phosphorylation Analysis of TMT-Labeled Peptides Using High-Field Asymmetric Waveform Ion Mobility Spectrometry

(2019) Devin K. Schweppe et al.   JOURNAL OF PROTEOME RESEARCH

Improved Precursor Characterization for Data-Dependent Mass Spectrometry

(2018) Alexander S. Hebert et al.   ANALYTICAL CHEMISTRY

Comprehensive Single-Shot Proteomics with FAIMS on a Hybrid Orbitrap Mass Spectrometer

(2018) Alexander S. Hebert et al.   ANALYTICAL CHEMISTRY

A novel differential ion mobility device expands the depth of proteome coverage and the sensitivity of multiplex proteomic measurements

(2018) Sibylle Pfammatter et al.   MOLECULAR & CELLULAR PROTEOMICS

Ultra-High Pressure (>30,000 psi) Packing of Capillary Columns Enhancing Depth of Shotgun Proteomic Analyses

(2018) Evgenia Shishkova et al.   ANALYTICAL CHEMISTRY

Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer

(2018) Florian Meier et al.   MOLECULAR & CELLULAR PROTEOMICS

AACR Project GENIE: Powering Precision Medicine through an International Consortium

(2017)   Cancer Discovery

An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes

(2017) Dorte B. Bekker-Jensen et al.   Cell Systems

An integrative approach to predicting the functional effects of non-coding and coding sequence variation

(2015) Hashem A. Shihab et al.   BIOINFORMATICS

Accurate Multiplexed Proteomics at the MS2 Level Using the Complement Reporter Ion Cluster

(2012) Martin Wühr et al.   ANALYTICAL CHEMISTRY

Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis

(2012) Serena Di Palma et al.   Journal of Proteomics

More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS

(2011) Annette Michalski et al.   JOURNAL OF PROTEOME RESEARCH

De NovoSequencing and Homology Searching

(2011) Bin Ma et al.   MOLECULAR & CELLULAR PROTEOMICS

Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging

(2011) Craig D Wenger et al.   NATURE METHODS

Optimum Waveforms for Differential Ion Mobility Spectrometry (FAIMS)

(2008) A SHVARTSBURG et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY