De NovoSequencing and Homology Searching

Analysis of common bean expressed sequence tags identifies sulfur metabolic pathways active in seed and sulfur-rich proteins highly expressed in the absence of phaseolin and major lectins

(2011) Fuqiang Yin et al.   BMC GENOMICS

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Tandem Time-of-Flight Mass Spectrometer with High Precursor Ion Selectivity Employing Spiral Ion Trajectory and Improved Offset Parabolic Reflectron

(2011) Takaya Satoh et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Better score function for peptide identification with ETD MS/MS spectra

(2010) Xiaowen Liu et al.   BMC BIOINFORMATICS

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

(2010) Chongle Pan et al.   BMC BIOINFORMATICS

Differences in Brachypelma albopilosa (theraphosidae) hemolymph proteome between subadult and adult females

(2010) Marie Trabalon et al.   Journal of Experimental Zoology Part A-Ecological Genetics and Physiology

pNovo:De novoPeptide Sequencing and Identification Using HCD Spectra

(2010) Hao Chi et al.   JOURNAL OF PROTEOME RESEARCH

The mobile proton hypothesis in fragmentation of protonated peptides: A perspective

(2010) Robert Boyd et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Identification of a novel Plasmopara halstedii elicitor protein combining de novo peptide sequencing algorithms and RACE-PCR

(2010) Stephan Jung et al.   Proteome Science

ADEPTS: ADVANCED PEPTIDE DE NOVO SEQUENCING WITH A PAIR OF TANDEM MASS SPECTRA

(2010) LIN HE et al.   Journal of Bioinformatics and Computational Biology

Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy

(2009) Xiaowen Liu et al.   BIOINFORMATICS

De novopeptide sequencing by tandem MS using complementary CID and electron transfer dissociation

(2009) Andreas Bertsch et al.   ELECTROPHORESIS

Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing

(2009) Ritendra Datta et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Observations on the detection of b- and y-type ions in the collisionally activated decomposition spectra of protonated peptides

(2009) King Wai Lau et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Isolation and Characterization of Carnocyclin A, a Novel Circular Bacteriocin Produced by Carnobacterium maltaromaticum UAL307

(2008) L. A. Martin-Visscher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multi-spectra peptide sequencing and its applications to multistage mass spectrometry

(2008) N. Bandeira et al.   BIOINFORMATICS

Proteome Analysis of Pitcher Fluid of the Carnivorous PlantNepenthes alata

(2008) Naoya Hatano et al.   JOURNAL OF PROTEOME RESEARCH

Valence Parity Rendersz•-Type Ions Chemically Distinct

(2008) Shane L. Hubler et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Automated de novo protein sequencing of monoclonal antibodies

(2008) Nuno Bandeira et al.   NATURE BIOTECHNOLOGY

Proteome-wide characterization of sugarbeet seed vigor and its tissue specific expression

(2008) J. Catusse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comparative study of the accuracy of severalde novosequencing software packages for datasets derived by matrix-assisted laser desorption/ionisation and electrospray

(2008) Scott Bringans et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY