Genome-scale mRNA and small RNA transcriptomic insights into initiation of citrus apomixis

miR393 contributes to the embryogenic transition induced in vitro in Arabidopsis via the modification of the tissue sensitivity to auxin treatment

(2016) Anna M. Wójcik et al.   PLANTA

Somatic and zygotic embryos share common developmental features at the onset of plant embryogenesis

(2015) Dunja Leljak-Levanić et al.   ACTA PHYSIOLOGIAE PLANTARUM

Somatic embryogenesis — Stress-induced remodeling of plant cell fate

(2015) Attila Fehér   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Genomewide analysis of small RNAs in nonembryogenic and embryogenic tissues of citrus: microRNA-and siRNA-mediated transcript cleavage involved in somatic embryogenesis

(2015) Xiao-Meng Wu et al.   PLANT BIOTECHNOLOGY JOURNAL

Induction of Embryogenesis in Brassica Napus Microspores Produces a Callosic Subintinal Layer and Abnormal Cell Walls with Altered Levels of Callose and Cellulose

(2015) Verónica Parra-Vega et al.   Frontiers in Plant Science

Polyamine and Its Metabolite H2O2 Play a Key Role in the Conversion of Embryogenic Callus into Somatic Embryos in Upland Cotton (Gossypium hirsutum L.)

(2015) Wen-Han Cheng et al.   Frontiers in Plant Science

Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange

(2014) Yuanlong Liu et al.   BMC GENOMICS

The Genetic Control of Apomixis: Asexual Seed Formation

(2014) Melanie L. Hand et al.   GENETICS

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

(2014) G Albert Wu et al.   NATURE BIOTECHNOLOGY

Stress induced acquisition of somatic embryogenesis in common bean Phaseolus vulgaris L.

(2014) José Luis Cabrera-Ponce et al.   PROTOPLASMA

Comparative transcriptome analysis of ovules reveals stress related genes associated with nucellar polyembryony in citrus

(2014) Vajinder Kumar et al.   Tree Genetics & Genomes

Apomictic and Sexual Germline Development Differ with Respect to Cell Cycle, Transcriptional, Hormonal and Epigenetic Regulation

(2014) Anja Schmidt et al.   PLoS Genetics

Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis

(2013) Xiyan Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative transcriptome analysis between somatic embryos (SEs) and zygotic embryos in cotton: evidence for stress response functions in SE development

(2013) Fangyan Jin et al.   PLANT BIOTECHNOLOGY JOURNAL

LACCASE Is Necessary and Nonredundant with PEROXIDASE for Lignin Polymerization during Vascular Development in Arabidopsis

(2013) Q. Zhao et al.   PLANT CELL

Selection and validation of suitable reference genes for mRNA qRT-PCR analysis using somatic embryogenic cultures, floral and vegetative tissues in citrus

(2013) Zheng Liu et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Characterization of genes associated with polyembryony and in vitro somatic embryogenesis in Citrus

(2013) Michiharu Nakano et al.   Tree Genetics & Genomes

A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the ‘true citrus fruit trees’ group (Citrinae, Rutaceae) and the origin of cultivated species

(2012) Andres Garcia-Lor et al.   ANNALS OF BOTANY

Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis

(2012) M. R. Tucker et al.   DEVELOPMENT

Callose Deposition Is Required for Somatic Embryogenesis in Plasmolyzed Eleutherococcus senticosus Zygotic Embryos

(2012) Lei Tao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues

(2012) Shu-Jun Kou et al.   PLANT CELL REPORTS

Transcriptional profiling of genes involved in embryogenic, non-embryogenic calluses and somatic embryogenesis of Valencia sweet orange by SSH-based microarray

(2012) Xiao-Xia Ge et al.   PLANTA

Reference Genes for Accurate Transcript Normalization in Citrus Genotypes under Different Experimental Conditions

(2012) Valéria Mafra et al.   PLoS One

Polyembryony and seedling emergence traits in apomictic citrus

(2012) Kundan Kishore et al.   SCIENTIA HORTICULTURAE

Analysis of conserved microRNAs in floral tissues of sexual and apomictic Boechera species

(2011) Samuel Amiteye et al.   BMC GENOMICS

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Production of Viable Gametes without Meiosis in Maize Deficient for an ARGONAUTE Protein

(2011) Manjit Singh et al.   PLANT CELL

Characterization of genomic sequence showing strong association with polyembryony among diverse Citrus species and cultivars, and its synteny with Vitis and Populus

(2011) Michiharu Nakano et al.   PLANT SCIENCE

Polyembryony in non-apomictic citrus genotypes

(2010) Pablo Aleza et al.   ANNALS OF BOTANY

Control of female gamete formation by a small RNA pathway in Arabidopsis

(2010) Vianey Olmedo-Monfil et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

AFLP markers closely linked to a major gene essential for nucellar embryony (apomixis) in Citrus maxima × Poncirus trifoliata

(2009) J. L. Kepiro et al.   Tree Genetics & Genomes

Marker enrichment and construction of haplotype-specific BAC contigs for the polyembryony genomic region in Citrus

(2008) Michiharu Nakano et al.   BREEDING SCIENCE

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Proteomic analysis of somatic embryogenesis in Valencia sweet orange (Citrus sinensis Osbeck)

(2008) Zhiyong Pan et al.   PLANT CELL REPORTS