Protein phosphorylation in chloroplasts – a survey of phosphorylation targets

A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight

(2015) Yuxuan Hou et al.   BMC PLANT BIOLOGY

Quantitative Phosphoproteomics of the Ataxia Telangiectasia-Mutated (ATM) and Ataxia Telangiectasia-Mutated and Rad3-related (ATR) Dependent DNA Damage Response inArabidopsis thaliana

(2015) Elisabeth Roitinger et al.   MOLECULAR & CELLULAR PROTEOMICS

The EMBL-EBI bioinformatics web and programmatic tools framework

(2015) Weizhong Li et al.   NUCLEIC ACIDS RESEARCH

Update: Post-translational protein modifications in plant metabolism

(2015) Giulia Friso et al.   PLANT PHYSIOLOGY

On the Extent of Tyrosine Phosphorylation in Chloroplasts

(2015) Qintao Lu et al.   PLANT PHYSIOLOGY

Arabidopsis casein kinase 2 α4 subunit regulates various developmental pathways in a functionally overlapping manner

(2015) Jidnyasa Jayant Mulekar et al.   PLANT SCIENCE

Visualization of LC-MS/MS proteomics data in MaxQuant

(2015) Stefka Tyanova et al.   PROTEOMICS

Regulation and Dynamics of the Light-Harvesting System

(2014) Jean-David Rochaix   Annual Review of Plant Biology

Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice)

(2014) Qingtao Lu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Plastid casein kinase 2 knockout reduces abscisic acid (ABA) sensitivity, thermotolerance, and expression of ABA- and heat-stress-responsive nuclear genes

(2014) Yu Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs

(2014) K. J. van Wijk et al.   PLANT CELL

High Light-Dependent Phosphorylation of Photosystem II Inner Antenna CP29 in Monocots Is STN7 Independent and Enhances Nonphotochemical Quenching

(2014) Nico Betterle et al.   PLANT PHYSIOLOGY

The Peptide Microarray “ChloroPhos1.0” Identifies New Phosphorylation Targets of Plastid Casein Kinase II (pCKII) in Arabidopsis thaliana

(2014) Anna Schönberg et al.   PLoS One

Phosphorylation ofArabidopsistransketolase at Ser428provides a potential paradigm for the metabolic control of chloroplast carbon metabolism

(2013) Agostinho G. Rocha et al.   BIOCHEMICAL JOURNAL

The significance of CP29 reversible phosphorylation in thylakoids of higher plants under environmental stresses

(2013) Yang-Er Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Sucrose-induced Receptor Kinase SIRK1 Regulates a Plasma Membrane Aquaporin in Arabidopsis

(2013) Xu Na Wu et al.   MOLECULAR & CELLULAR PROTEOMICS

Evolution and functional cross-talk of protein post-translational modifications

(2013) Pedro Beltrao et al.   Molecular Systems Biology

P3DB 3.0: From plant phosphorylation sites to protein networks

(2013) Qiuming Yao et al.   NUCLEIC ACIDS RESEARCH

Phosphorylation pattern of Rubisco activase inArabidopsisleaves

(2013) E. Boex-Fontvieille et al.   PLANT BIOLOGY

Loss of Plastoglobule Kinases ABC1K1 and ABC1K3 Causes Conditional Degreening, Modified Prenyl-Lipids, and Recruitment of the Jasmonic Acid Pathway

(2013) Peter K. Lundquist et al.   PLANT CELL

Parallel Proteomic and Phosphoproteomic Analyses of Successive Stages of Maize Leaf Development

(2013) M. R. Facette et al.   PLANT CELL

ABC1K1/PGR6 kinase: a regulatory link between photosynthetic activity and chloroplast metabolism

(2013) Jacopo Martinis et al.   PLANT JOURNAL

A Chloroplast ABC1-like Kinase Regulates Vitamin E Metabolism in Arabidopsis

(2013) J. Martinis et al.   PLANT PHYSIOLOGY

Phosphoproteomics ofArabidopsischloroplasts reveals involvement of the STN7 kinase in phosphorylation of nucleoid protein pTAC16

(2012) Björn Ingelsson et al.   FEBS LETTERS

Construction of Plastid Reference Proteomes for Maize and Arabidopsis and Evaluation of Their Orthologous Relationships; The Concept of Orthoproteomics

(2012) Mingshu Huang et al.   JOURNAL OF PROTEOME RESEARCH

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

(2012) Sandra K. Tanz et al.   NUCLEIC ACIDS RESEARCH

Differential phosphorylation of thylakoid proteins in mesophyll and bundle sheath chloroplasts from maize plants grown under low or high light

(2012) Rikard Fristedt et al.   PROTEOMICS

ABC1K atypical kinases in plants: filling the organellar kinase void

(2012) Peter K. Lundquist et al.   TRENDS IN PLANT SCIENCE

Essential nucleoid proteins in early chloroplast development

(2012) Jeannette Pfalz et al.   TRENDS IN PLANT SCIENCE

Chloroplast-mediated activation of plant immune signalling in Arabidopsis

(2012) Hironari Nomura et al.   Nature Communications

Medicago PhosphoProtein Database: a repository for Medicago truncatula phosphoprotein data

(2012) Christopher M. Rose et al.   Frontiers in Plant Science

Current status of the plant phosphorylation site database PhosPhAt and its use as a resource for molecular plant physiology

(2012) Borjana Arsova et al.   Frontiers in Plant Science

Structure of green-type Rubisco activase from tobacco

(2011) Mathias Stotz et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Oxidation-reduction signalling components in regulatory pathways of state transitions and photosystem stoichiometry adjustment in chloroplasts

(2011) SUJITH PUTHIYAVEETIL et al.   PLANT CELL AND ENVIRONMENT

Plastid Proteomics in Higher Plants: Current State and Future Goals

(2011) K. J. van Wijk et al.   PLANT PHYSIOLOGY

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF)

(2011) S. Reiland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prophossi: automating expert validation of phosphopeptide–spectrum matches from tandem mass spectrometry

(2010) David M.A. Martin et al.   BIOINFORMATICS

Stt7-dependent Phosphorylation during State Transitions in the Green AlgaChlamydomonas reinhardtii

(2010) Sylvain Lemeille et al.   MOLECULAR & CELLULAR PROTEOMICS

State transitions at the crossroad of thylakoid signalling pathways

(2010) Sylvain Lemeille et al.   PHOTOSYNTHESIS RESEARCH

Plastidial Thioredoxin z Interacts with Two Fructokinase-Like Proteins in a Thiol-Dependent Manner: Evidence for an Essential Role in Chloroplast Development in Arabidopsis and Nicotiana benthamiana

(2010) B. Arsova et al.   PLANT CELL

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

(2010) H. Nakagami et al.   PLANT PHYSIOLOGY

Plastidial retrograde signalling – a true “plastid factor” or just metabolite signatures?

(2010) Thomas Pfannschmidt   TRENDS IN PLANT SCIENCE

The Chloroplast Kinase Network: New Insights from Large-Scale Phosphoproteome Profiling

(2009) Sacha Baginsky et al.   Molecular Plant

Dynamic Plastid Redox Signals Integrate Gene Expression and Metabolism to Induce Distinct Metabolic States in Photosynthetic Acclimation in Arabidopsis

(2009) K. Brautigam et al.   PLANT CELL

Large-Scale Arabidopsis Phosphoproteome Profiling Reveals Novel Chloroplast Kinase Substrates and Phosphorylation Networks

(2009) S. Reiland et al.   PLANT PHYSIOLOGY

Analytical strategies for phosphoproteomics

(2009) Tine E. Thingholm et al.   PROTEOMICS

Protein tyrosine phosphorylation in plants: more abundant than expected?

(2009) Sergio de la Fuente van Bentem et al.   TRENDS IN PLANT SCIENCE

Analysis of the Chloroplast Protein Kinase Stt7 during State Transitions

(2009) Sylvain Lemeille et al.   PLOS BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

The ancestral symbiont sensor kinase CSK links photosynthesis with gene expression in chloroplasts

(2008) S. Puthiyaveetil et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA