Quantitative Phosphoproteomics of the Ataxia Telangiectasia-Mutated (ATM) and Ataxia Telangiectasia-Mutated and Rad3-related (ATR) Dependent DNA Damage Response inArabidopsis thaliana

Arabidopsis thaliana WAPL Is Essential for the Prophase Removal of Cohesin during Meiosis

(2014) Kuntal De et al.   PLoS Genetics

Protein kinase CK2 is required for the recruitment of 53BP1 to sites of DNA double-strand break induced by radiomimetic drugs

(2013) Barbara Guerra et al.   CANCER LETTERS

Interplays between ATM/Tel1 and ATR/Mec1 in sensing and signaling DNA double-strand breaks

(2013) Elisa Gobbini et al.   DNA REPAIR

ATM-mediated phosphorylation of SOG1 is essential for the DNA damage response in Arabidopsis

(2013) Kaoru O Yoshiyama et al.   EMBO REPORTS

Another fork in the road—life or death decisions by the tumour suppressor p53

(2013) Luis A Carvajal et al.   EMBO REPORTS

Identification of Arabidopsis VTC3 as a putative and unique dual function protein kinase::protein phosphatase involved in the regulation of the ascorbic acid pool in plants

(2013) Patricia L. Conklin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative Phosphoproteomics after Auxin-stimulated Lateral Root Induction Identifies an SNX1 Protein Phosphorylation Site Required for Growth

(2013) Hongtao Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

PRP19 Transforms into a Sensor of RPA-ssDNA after DNA Damage and Drives ATR Activation via a Ubiquitin-Mediated Circuitry

(2013) Alexandre Maréchal et al.   MOLECULAR CELL

CHD chromatin remodelling enzymes and the DNA damage response

(2013) Fintan K.T. Stanley et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Wapl is an essential regulator of chromatin structure and chromosome segregation

(2013) Antonio Tedeschi et al.   NATURE

Causes and consequences of replication stress

(2013) Michelle K. Zeman et al.   NATURE CELL BIOLOGY

Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters

(2013) Kyuha Choi et al.   NATURE GENETICS

Genetics and Phosphoproteomics Reveal a Protein Phosphorylation Network in the Abscisic Acid Signaling Pathway in Arabidopsis thaliana

(2013) T. Umezawa et al.   Science Signaling

ATM Protein Physically and Functionally Interacts with Proliferating Cell Nuclear Antigen to Regulate DNA Synthesis

(2012) Armin M. Gamper et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Rapid Phosphoproteomic and Transcriptomic Changes in the Rhizobia-legume Symbiosis

(2012) Christopher M. Rose et al.   MOLECULAR & CELLULAR PROTEOMICS

Modification Site Localization Scoring: Strategies and Performance

(2012) Robert J. Chalkley et al.   MOLECULAR & CELLULAR PROTEOMICS

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

CK2-defective Arabidopsis plants exhibit enhanced double-strand break repair rates and reduced survival after exposure to ionizing radiation

(2012) Jordi Moreno-Romero et al.   PLANT JOURNAL

Phosphorylation of histone H2A is associated with centromere function and maintenance in meiosis

(2012) Qianhua Dong et al.   PLANT JOURNAL

Characterization of the phosphoproteome of mature Arabidopsis pollen

(2012) Pururawa Mayank et al.   PLANT JOURNAL

Quantitative Phosphoproteome Profiling of Iron-Deficient Arabidopsis Roots

(2012) P. Lan et al.   PLANT PHYSIOLOGY

Phosphoproteomic Analysis of Seed Maturation in Arabidopsis, Rapeseed, and Soybean

(2012) L. J. Meyer et al.   PLANT PHYSIOLOGY

Functional and Transcriptome Analysis Reveals an Acclimatization Strategy for Abiotic Stress Tolerance Mediated by Arabidopsis NF-YA Family Members

(2012) Marco Antonio Leyva-González et al.   PLoS One

Advances in Quantitative Phosphoproteomics

(2011) Carol L. Nilsson   ANALYTICAL CHEMISTRY

A Platform for Processing Expression of Short Time Series (PESTS)

(2011) Anshu Sinha et al.   BMC BIOINFORMATICS

Universal and Confident Phosphorylation Site Localization Using phosphoRS

(2011) Thomas Taus et al.   JOURNAL OF PROTEOME RESEARCH

Activation and Function of the MAPKs and Their Substrates, the MAPK-Activated Protein Kinases

(2011) M. Cargnello et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Correct Interpretation of Comprehensive Phosphorylation Dynamics Requires Normalization by Protein Expression Changes

(2011) Ronghu Wu et al.   MOLECULAR & CELLULAR PROTEOMICS

Arabidopsis REF6 is a histone H3 lysine 27 demethylase

(2011) Falong Lu et al.   NATURE GENETICS

Participation of Chromatin-Remodeling Proteins in the Repair of Ultraviolet-B-Damaged DNA

(2011) M. Campi et al.   PLANT PHYSIOLOGY

Glutathione Deficiency of the Arabidopsis Mutant pad2-1 Affects Oxidative Stress-Related Events, Defense Gene Expression, and the Hypersensitive Response

(2011) C. Dubreuil-Maurizi et al.   PLANT PHYSIOLOGY

Strong cation exchange (SCX) based analytical methods for the targeted analysis of protein post-translational modifications

(2010) Shabaz Mohammed et al.   CURRENT OPINION IN BIOTECHNOLOGY

Proteomics approaches to understand protein phosphorylation in pathway modulation

(2010) Waltraud X Schulze   CURRENT OPINION IN PLANT BIOLOGY

Mass spectrometry–based proteomics in cell biology

(2010) Tobias C. Walther et al.   JOURNAL OF CELL BIOLOGY

Site-specific Phosphorylation Dynamics of the Nuclear Proteome during the DNA Damage Response

(2010) Martin V. Bennetzen et al.   MOLECULAR & CELLULAR PROTEOMICS

Decoding signalling networks by mass spectrometry-based proteomics

(2010) Chunaram Choudhary et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

In planta changes in protein phosphorylation induced by the plant hormone abscisic acid

(2010) K. G. Kline et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ATM Activation by Oxidative Stress

(2010) Z. Guo et al.   SCIENCE

p53 post-translational modification: deregulated in tumorigenesis

(2010) Chao Dai et al.   TRENDS IN MOLECULAR MEDICINE

Common mechanisms of PIKK regulation

(2009) Courtney A. Lovejoy et al.   DNA REPAIR

High Precision Quantitative Proteomics Using iTRAQ on an LTQ Orbitrap: A New Mass Spectrometric Method Combining the Benefits of All

(2009) Thomas Köcher et al.   JOURNAL OF PROTEOME RESEARCH

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Mitogen-Activated Protein Kinases 3 and 6 Are Required for Full Priming of Stress Responses in Arabidopsis thaliana

(2009) G. J.M. Beckers et al.   PLANT CELL

Suppressor of gamma response 1 (SOG1) encodes a putative transcription factor governing multiple responses to DNA damage

(2009) K. Yoshiyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two Prp19-Like U-Box Proteins in the MOS4-Associated Complex Play Redundant Roles in Plant Innate Immunity

(2009) Jacqueline Monaghan et al.   PLoS Pathogens

SNP high-throughput screening in grapevine using the SNPlex™ genotyping system

(2008) Massimo Pindo et al.   BMC PLANT BIOLOGY

DNA stress checkpoint control and plant development

(2008) Toon Cools et al.   CURRENT OPINION IN PLANT BIOLOGY

Mre11–Rad50–Nbs1-dependent processing of DNA breaks generates oligonucleotides that stimulate ATM activity

(2008) Ali Jazayeri et al.   EMBO JOURNAL

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

(2008) Judit Villén et al.   Nature Protocols

Both ATM and ATR promote the efficient and accurate processing of programmed meiotic double-strand breaks

(2008) Kevin M. Culligan et al.   PLANT JOURNAL