DNA Methylation Difference between Female and Male Ussuri Catfish (Pseudobagrus ussuriensis) in Brain and Gonad Tissues

DNA methylation differences between male and female gonads of the oyster reveal the role of epigenetics in sex determination

(2022) Dongfang Sun et al.   GENE

Identification of sex-specific sequences through 2b-RAD sequencing in Pseudobagrus ussuriensis

(2021) Chuankun Zhu et al.   AQUACULTURE

Differential expression analysis and identification of sex-related genes by gonad transcriptome sequencing in estradiol-treated and non-treated Ussuri catfish Pseudobagrus ussuriensis

(2021) ZhengJun Pan et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns

(2020) Yang Zhou et al.   BMC BIOLOGY

Comparative transcriptome analysis reveals the sexual dimorphic expression profiles of mRNAs and non-coding RNAs in the Asian yellow pond turtle (Meauremys mutica)

(2020) Xiaoli Liu et al.   GENE

Transcriptome Profiling Reveals the Sexual Dimorphism of Gene Expression Patterns during Gonad Differentiation in the Half-Smooth Tongue Sole (Cynoglossus semilaevis)

(2020) Genmei Lin et al.   MARINE BIOTECHNOLOGY

Characterization of sexual size dimorphism and sex-biased genes expression profile in the olive flounder

(2020) Jea-Woon Ryu et al.   MOLECULAR BIOLOGY REPORTS

A time course transcriptome analysis of brains from sex-undifferentiated Nile tilapia discloses genes associated with high-temperature-induced masculinization

(2020) Zhi Lei Yao et al.   AQUACULTURE

The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish

(2019) Lisui Bao et al.   BMC BIOLOGY

A SNP in a Steroidogenic Enzyme Is Associated with Phenotypic Sex in Seriola Fishes

(2019) Takashi Koyama et al.   CURRENT BIOLOGY

Genome-wide analysis of methylation in giant pandas with cataract by methylation-dependent restriction-site associated DNA sequencing (MethylRAD)

(2019) Yuyan You et al.   PLoS One

Changes in DNA methylation during epigenetic-associated sex reversal under low temperature in Takifugu rubripes

(2019) He Zhou et al.   PLoS One

The Genetics and Epigenetics of Sex Change in Fish

(2019) Oscar Ortega-Recalde et al.   Annual Review of Animal Biosciences

QTL Fine Mapping for Sex Determination Region in Bighead Carp (Hypophthalmichthys nobilis) and Comparison with Silver Carp (Hypophthalmichthys molitrix)

(2019) Ying Zhou et al.   MARINE BIOTECHNOLOGY

Sex-specific markers developed by next-generation sequencing confirmed an XX/XY sex determination system in bighead carp (Hypophthalmichthys nobilis) and silver carp (Hypophthalmichthys molitrix)

(2018) Haiyang Liu et al.   DNA RESEARCH

Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories

(2018) Matthew C. Hale et al.   PLoS One

The Colorful Sex Chromosomes of Teleost Fish

(2018) Verena Kottler et al.   Genes

Dynamic epimarks in sex-related genes predict gonad phenotype in seabass, a fish with mixed genetic and environmental sex determination

(2018) Dafni Anastasiadi et al.   Epigenetics

Vertebrate sex determination: evolutionary plasticity of a fundamental switch

(2017) Blanche Capel   NATURE REVIEWS GENETICS

Computational identification of Y-linked markers and genes in the grass carp genome by using a pool-and-sequence method

(2017) Aidi Zhang et al.   Scientific Reports

GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

(2016) Santhilal Subhash et al.   BMC BIOINFORMATICS

Global DNA Methylation Changes in Nile Tilapia Gonads during High Temperature-Induced Masculinization

(2016) Li-Xue Sun et al.   PLoS One

Temperature Shift Alters DNA Methylation and Histone Modification Patterns in Gonadal Aromatase (cyp19a1) Gene in Species with Temperature-Dependent Sex Determination

(2016) Yuiko Matsumoto et al.   PLoS One

Identification of sex-linked SNP markers using RAD sequencing suggests ZW/ZZ sex determination in Pistacia vera L.

(2015) Salih Kafkas et al.   BMC GENOMICS

Identification of Sex-Specific Markers Reveals Male Heterogametic Sex Determination in Pseudobagrus ussuriensis

(2015) Zheng-Jun Pan et al.   MARINE BIOTECHNOLOGY

Function and information content of DNA methylation

(2015) Dirk Schübeler   NATURE

The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation

(2015) Yaping Wang et al.   NATURE GENETICS

Genetic basis and biotechnological manipulation of sexual dimorphism and sex determination in fish

(2015) Jie Mei et al.   Science China-Life Sciences

MethylRAD: a simple and scalable method for genome-wide DNA methylation profiling using methylation-dependent restriction enzymes

(2015) Shi Wang et al.   Open Biology

The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo)

(2014) Tereza Manousaki et al.   BMC GENOMICS

Epigenetic modification and inheritance in sexual reversal of fish

(2014) C. Shao et al.   GENOME RESEARCH

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Characterization of Gonadal Transcriptomes from Nile Tilapia (Oreochromis niloticus) Reveals Differentially Expressed Genes

(2013) Wenjing Tao et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Sex determination strategies in 2012: towards a common regulatory model?

(2012) Roxani Angelopoulou et al.   Reproductive Biology and Endocrinology

The MspJI family of modification-dependent restriction endonucleases for epigenetic studies

(2011) D. Cohen-Karni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers

(2010) Frank Lyko et al.   PLOS BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology